2MZI

NMR Solution Structure of the PRO Form of Human Matrilysin (proMMP-7) in Complex with Anionic Membrane

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Membrane Protein Annotation: OPM

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2mzia1	All alpha proteins	PGBD-like	PGBD-like	automated matches	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d2mzia2	Alpha and beta proteins (a+b)	Zincin-like	Metalloproteases ('zincins'), catalytic domain	automated matches	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Metalloproteases (zincins), catalytic domain	8035556	3001975	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PG_binding_1	e2mziA2	A: alpha arrays	X: PGBD-like (From Topology)	H: PGBD-like (From Topology)	T: PGBD-like	F: PG_binding_1	ECOD (1.6)
A	Peptidase_M10	e2mziA1	A: mixed a+b and a/b	X: Zincin-like	H: Metalloproteases (zincins) catalytic domain (From Topology)	T: Metalloproteases (zincins) catalytic domain	F: Peptidase_M10	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.40.390.10	Alpha Beta	3-Layer(aba) Sandwich	Collagenase (Catalytic Domain)	Collagenase (Catalytic Domain)	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00413	Matrixin (Peptidase_M10)	Matrixin	The members of this family are enzymes that cleave peptides. These proteases require zinc for catalysis.	Domain
A	PF01471	Putative peptidoglycan binding domain (PG_binding_1)	Putative peptidoglycan binding domain	This domain is composed of three alpha helices [1]. This domain is found at the N or C terminus of a variety of enzymes involved in bacterial cell wall degradation [2]. This domain may have a general peptidoglycan binding function. This family is ...	This domain is composed of three alpha helices [1]. This domain is found at the N or C terminus of a variety of enzymes involved in bacterial cell wall degradation [2]. This domain may have a general peptidoglycan binding function. This family is found N-terminal to the catalytic domain of matrixins [3]. The domain is found to bind peptidoglycan experimentally [4].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Matrilysin	peptidase activity catalytic activity, acting on a protein metallopeptidase activity hydrolase activity catalytic activity metalloendopeptidase activity endopeptidase activity serine hydrolase activity serine-type peptidase activity serine-type endopeptidase activity cation binding transition metal ion binding zinc ion binding ion binding peptidase activity catalytic activity, acting on a protein metallopeptidase activity hydrolase activity catalytic activity metalloendopeptidase activity endopeptidase activity serine hydrolase activity serine-type peptidase activity serine-type endopeptidase activity cation binding transition metal ion binding zinc ion binding ion binding binding metal ion binding small molecule binding	response to stimulus response to chemical response to xenobiotic stimulus collagen catabolic process catabolic process metabolic process cellular process collagen metabolic process cellular component organization extracellular matrix organization cellular component organization or biogenesis extracellular structure organization external encapsulating structure organization cellular component disassembly response to stimulus response to chemical response to xenobiotic stimulus collagen catabolic process catabolic process metabolic process cellular process collagen metabolic process cellular component organization extracellular matrix organization cellular component organization or biogenesis extracellular structure organization external encapsulating structure organization cellular component disassembly extracellular matrix disassembly antibacterial peptide production humoral immune response biological process involved in interspecies interaction between organisms antimicrobial humoral response response to biotic stimulus defense response to bacterium antimicrobial humoral immune response mediated by antimicrobial peptide antimicrobial peptide production response to stress response to bacterium response to external biotic stimulus production of molecular mediator of immune response response to other organism defense response immune response defense response to symbiont response to external stimulus antibacterial humoral response gene expression macromolecule biosynthetic process biosynthetic process peptide biosynthetic process antibacterial peptide biosynthetic process immune system process defense response to other organism antimicrobial peptide biosynthetic process macromolecule metabolic process peptide metabolic process antimicrobial peptide secretion nitrogen compound transport transport peptide secretion localization amide transport antibacterial peptide secretion secretion establishment of localization peptide transport membrane protein intracellular domain proteolysis proteolysis membrane protein proteolysis primary metabolic process protein metabolic process positive regulation of locomotion regulation of biological process regulation of cell motility regulation of cellular process biological regulation positive regulation of biological process positive regulation of cell migration regulation of locomotion positive regulation of cell motility regulation of cell migration cell migration cell motility locomotion positive regulation of cellular process cell population proliferation regulation of cell population proliferation defense response to Gram-negative bacterium membrane protein ectodomain proteolysis defense response to Gram-positive bacterium	extracellular exosome membrane-bounded organelle extracellular vesicle cellular anatomical structure extracellular organelle extracellular region organelle extracellular space vesicle extracellular membrane-bounded organelle cell periphery extracellular matrix external encapsulating structure

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR021158	Peptidase M10A, cysteine switch, zinc binding site	Binding Site
A	IPR036365	PGBD-like superfamily	Homologous Superfamily
A	IPR001818	Peptidase M10, metallopeptidase	Domain
A	IPR021190	Peptidase M10A	Family
A	IPR002477	Peptidoglycan binding-like	Domain
A	IPR006026	Peptidase, metallopeptidase	Domain
A	IPR024079	Metallopeptidase, catalytic domain superfamily	Homologous Superfamily
A	IPR033739	Peptidase M10A, catalytic domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: P09237	malignant colon neoplasm lung adenocarcinoma malignant ependymoma Malignant neoplasm of stomach non-small cell lung carcinoma periodontitis benign colon neoplasm cancer transitional cell carcinoma colonic neoplasm digestive system disease gastric carcinoma hereditary diffuse gastric adenocarcinoma lung carcinoma malignant glioma malignant colon neoplasm lung adenocarcinoma malignant ependymoma Malignant neoplasm of stomach non-small cell lung carcinoma periodontitis benign colon neoplasm cancer transitional cell carcinoma colonic neoplasm digestive system disease gastric carcinoma hereditary diffuse gastric adenocarcinoma lung carcinoma malignant glioma malignant pancreatic neoplasm ovarian cancer prostate carcinoma breast cancer Sjogren syndrome chronic kidney disease ulcerative colitis Crohn disease esophageal adenocarcinoma gastric neoplasm interstitial lung disease malignant mesothelioma neuroblastoma pancreatic ductal adenocarcinoma atopic eczema psoriasis breast carcinoma chronic obstructive pulmonary disease ureteral obstruction cystic fibrosis gastric cancer head and neck cancer

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A	OPM	Transmembrane	Bitopic proteins	Peptidase MA	Matrixin

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.