2NV2
Structure of the PLP synthase complex Pdx1/2 (YaaD/E) from Bacillus subtilis
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Ribulose-phoshate binding barrel | 8085956 | 3000216 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | Ribulose-phoshate binding barrel | 8085956 | 3000216 | SCOP2B (2022-06-29) |
I | SCOP2B Superfamily | Ribulose-phoshate binding barrel | 8085956 | 3000216 | SCOP2B (2022-06-29) |
K | SCOP2 Family | PdxS-like | 8085955 | 4002281 | SCOP2 (2022-06-29) |
K | SCOP2 Superfamily | Ribulose-phoshate binding barrel | 8085956 | 3000216 | SCOP2 (2022-06-29) |
M | SCOP2B Superfamily | Ribulose-phoshate binding barrel | 8085956 | 3000216 | SCOP2B (2022-06-29) |
O | SCOP2B Superfamily | Ribulose-phoshate binding barrel | 8085956 | 3000216 | SCOP2B (2022-06-29) |
Q | SCOP2B Superfamily | Ribulose-phoshate binding barrel | 8085956 | 3000216 | SCOP2B (2022-06-29) |
S | SCOP2B Superfamily | Ribulose-phoshate binding barrel | 8085956 | 3000216 | SCOP2B (2022-06-29) |
U | SCOP2B Superfamily | Ribulose-phoshate binding barrel | 8085956 | 3000216 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Ribulose-phoshate binding barrel | 8085956 | 3000216 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Ribulose-phoshate binding barrel | 8085956 | 3000216 | SCOP2B (2022-06-29) |
W | SCOP2B Superfamily | Ribulose-phoshate binding barrel | 8085956 | 3000216 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Class I glutamine amidotransferase-like | 8043266 | 3001405 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Class I glutamine amidotransferase-like | 8043266 | 3001405 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Class I glutamine amidotransferase-like | 8043266 | 3001405 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | Class I glutamine amidotransferase-like | 8043266 | 3001405 | SCOP2B (2022-06-29) |
J | SCOP2B Superfamily | Class I glutamine amidotransferase-like | 8043266 | 3001405 | SCOP2B (2022-06-29) |
L | SCOP2B Superfamily | Class I glutamine amidotransferase-like | 8043266 | 3001405 | SCOP2B (2022-06-29) |
N | SCOP2B Superfamily | Class I glutamine amidotransferase-like | 8043266 | 3001405 | SCOP2B (2022-06-29) |
P | SCOP2B Superfamily | Class I glutamine amidotransferase-like | 8043266 | 3001405 | SCOP2B (2022-06-29) |
R | SCOP2B Superfamily | Class I glutamine amidotransferase-like | 8043266 | 3001405 | SCOP2B (2022-06-29) |
T | SCOP2B Superfamily | Class I glutamine amidotransferase-like | 8043266 | 3001405 | SCOP2B (2022-06-29) |
V | SCOP2B Superfamily | Class I glutamine amidotransferase-like | 8043266 | 3001405 | SCOP2B (2022-06-29) |
X | SCOP2B Superfamily | Class I glutamine amidotransferase-like | 8043266 | 3001405 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | SOR_SNZ | e2nv2A1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: SOR_SNZ | ECOD (1.6) |
G | SOR_SNZ | e2nv2G1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: SOR_SNZ | ECOD (1.6) |
I | SOR_SNZ | e2nv2I1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: SOR_SNZ | ECOD (1.6) |
K | SOR_SNZ | e2nv2K1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: SOR_SNZ | ECOD (1.6) |
M | SOR_SNZ | e2nv2M1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: SOR_SNZ | ECOD (1.6) |
O | SOR_SNZ | e2nv2O1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: SOR_SNZ | ECOD (1.6) |
Q | SOR_SNZ | e2nv2Q1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: SOR_SNZ | ECOD (1.6) |
S | SOR_SNZ | e2nv2S1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: SOR_SNZ | ECOD (1.6) |
U | SOR_SNZ | e2nv2U1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: SOR_SNZ | ECOD (1.6) |
C | SOR_SNZ | e2nv2C1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: SOR_SNZ | ECOD (1.6) |
E | SOR_SNZ | e2nv2E1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: SOR_SNZ | ECOD (1.6) |
W | SOR_SNZ | e2nv2W1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: SOR_SNZ | ECOD (1.6) |
B | GATase | e2nv2B1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Class I glutamine amidotransferase-like | F: GATase | ECOD (1.6) |
D | GATase | e2nv2D1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Class I glutamine amidotransferase-like | F: GATase | ECOD (1.6) |
F | GATase | e2nv2F1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Class I glutamine amidotransferase-like | F: GATase | ECOD (1.6) |
H | GATase | e2nv2H1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Class I glutamine amidotransferase-like | F: GATase | ECOD (1.6) |
J | GATase | e2nv2J1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Class I glutamine amidotransferase-like | F: GATase | ECOD (1.6) |
L | GATase | e2nv2L1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Class I glutamine amidotransferase-like | F: GATase | ECOD (1.6) |
N | GATase | e2nv2N1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Class I glutamine amidotransferase-like | F: GATase | ECOD (1.6) |
P | GATase | e2nv2P1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Class I glutamine amidotransferase-like | F: GATase | ECOD (1.6) |
R | GATase | e2nv2R1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Class I glutamine amidotransferase-like | F: GATase | ECOD (1.6) |
T | GATase | e2nv2T1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Class I glutamine amidotransferase-like | F: GATase | ECOD (1.6) |
V | GATase | e2nv2V1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Class I glutamine amidotransferase-like | F: GATase | ECOD (1.6) |
X | GATase | e2nv2X1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Class I glutamine amidotransferase-like | F: GATase | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01680 | SOR/SNZ family (SOR_SNZ) | SOR/SNZ family | Members of this family are enzymes involved in a new pathway of pyridoxine/pyridoxal 5-phosphate biosynthesis [1]. This family was formerly known as UPF0019. | Domain | |
PF00117 | Glutamine amidotransferase class-I (GATase) | Glutamine amidotransferase class-I | - | Domain | |
PF01174 | SNO glutamine amidotransferase family (SNO) | SNO glutamine amidotransferase family | This family and its amidotransferase domain was first described in [1]. It is predicted that members of this family are involved in the pyridoxine biosynthetic pathway, based on the proximity and co-regulation of the corresponding genes and physical ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR011060 | Ribulose-phosphate binding barrel | Homologous Superfamily | |
IPR001852 | Pyridoxal 5'-phosphate synthase subunit PdxS/SNZ | Family | |
IPR013785 | Aldolase-type TIM barrel | Homologous Superfamily | |
IPR033755 | PdxS/SNZ N-terminal domain | Domain | |
IPR029062 | Class I glutamine amidotransferase-like | Homologous Superfamily | |
IPR002161 | Pyridoxal 5'-phosphate synthase subunit PdxT/SNO | Family | |
IPR021196 | PdxT/SNO family, conserved site | Conserved Site |