Structural and mechanistic changes along an engineered path from metallo to non-metallo KDO8P synthase.
External Resource: Annotation
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
A | d2nxha_ | Alpha and beta proteins (a/b) | TIM beta/alpha-barrel | Aldolase | Class I DAHP synthetase | 3-deoxy-D-manno-octulosonate 8-phosphate synthase (KDO8P synthase) | (Aquifex aeolicus ) [TaxId: 63363 ], | SCOPe (2.08) |
B | d2nxhb_ | Alpha and beta proteins (a/b) | TIM beta/alpha-barrel | Aldolase | Class I DAHP synthetase | 3-deoxy-D-manno-octulosonate 8-phosphate synthase (KDO8P synthase) | (Aquifex aeolicus ) [TaxId: 63363 ], | SCOPe (2.08) |
C | d2nxhc_ | Alpha and beta proteins (a/b) | TIM beta/alpha-barrel | Aldolase | Class I DAHP synthetase | 3-deoxy-D-manno-octulosonate 8-phosphate synthase (KDO8P synthase) | (Aquifex aeolicus ) [TaxId: 63363 ], | SCOPe (2.08) |
D | d2nxhd_ | Alpha and beta proteins (a/b) | TIM beta/alpha-barrel | Aldolase | Class I DAHP synthetase | 3-deoxy-D-manno-octulosonate 8-phosphate synthase (KDO8P synthase) | (Aquifex aeolicus ) [TaxId: 63363 ], | SCOPe (2.08) |
E | d2nxhe_ | Alpha and beta proteins (a/b) | TIM beta/alpha-barrel | Aldolase | Class I DAHP synthetase | 3-deoxy-D-manno-octulosonate 8-phosphate synthase (KDO8P synthase) | (Aquifex aeolicus ) [TaxId: 63363 ], | SCOPe (2.08) |
F | d2nxhf_ | Alpha and beta proteins (a/b) | TIM beta/alpha-barrel | Aldolase | Class I DAHP synthetase | 3-deoxy-D-manno-octulosonate 8-phosphate synthase (KDO8P synthase) | (Aquifex aeolicus ) [TaxId: 63363 ], | SCOPe (2.08) |
G | d2nxhg_ | Alpha and beta proteins (a/b) | TIM beta/alpha-barrel | Aldolase | Class I DAHP synthetase | 3-deoxy-D-manno-octulosonate 8-phosphate synthase (KDO8P synthase) | (Aquifex aeolicus ) [TaxId: 63363 ], | SCOPe (2.08) |
H | d2nxhh_ | Alpha and beta proteins (a/b) | TIM beta/alpha-barrel | Aldolase | Class I DAHP synthetase | 3-deoxy-D-manno-octulosonate 8-phosphate synthase (KDO8P synthase) | (Aquifex aeolicus ) [TaxId: 63363 ], | SCOPe (2.08) |
I | d2nxhi_ | Alpha and beta proteins (a/b) | TIM beta/alpha-barrel | Aldolase | Class I DAHP synthetase | 3-deoxy-D-manno-octulosonate 8-phosphate synthase (KDO8P synthase) | (Aquifex aeolicus ) [TaxId: 63363 ], | SCOPe (2.08) |
J | d2nxhj_ | Alpha and beta proteins (a/b) | TIM beta/alpha-barrel | Aldolase | Class I DAHP synthetase | 3-deoxy-D-manno-octulosonate 8-phosphate synthase (KDO8P synthase) | (Aquifex aeolicus ) [TaxId: 63363 ], | SCOPe (2.08) |
K | d2nxhk_ | Alpha and beta proteins (a/b) | TIM beta/alpha-barrel | Aldolase | Class I DAHP synthetase | 3-deoxy-D-manno-octulosonate 8-phosphate synthase (KDO8P synthase) | (Aquifex aeolicus ) [TaxId: 63363 ], | SCOPe (2.08) |
L | d2nxhl_ | Alpha and beta proteins (a/b) | TIM beta/alpha-barrel | Aldolase | Class I DAHP synthetase | 3-deoxy-D-manno-octulosonate 8-phosphate synthase (KDO8P synthase) | (Aquifex aeolicus ) [TaxId: 63363 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
A | SCOP2B Superfamily | Aldolase | 8036477 | 3000445 | SCOP2B (2021-05-27) |
B | SCOP2B Superfamily | Aldolase | 8036477 | 3000445 | SCOP2B (2021-05-27) |
C | SCOP2B Superfamily | Aldolase | 8036477 | 3000445 | SCOP2B (2021-05-27) |
D | SCOP2B Superfamily | Aldolase | 8036477 | 3000445 | SCOP2B (2021-05-27) |
E | SCOP2B Superfamily | Aldolase | 8036477 | 3000445 | SCOP2B (2021-05-27) |
F | SCOP2B Superfamily | Aldolase | 8036477 | 3000445 | SCOP2B (2021-05-27) |
G | SCOP2B Superfamily | Aldolase | 8036477 | 3000445 | SCOP2B (2021-05-27) |
H | SCOP2B Superfamily | Aldolase | 8036477 | 3000445 | SCOP2B (2021-05-27) |
I | SCOP2B Superfamily | Aldolase | 8036477 | 3000445 | SCOP2B (2021-05-27) |
J | SCOP2B Superfamily | Aldolase | 8036477 | 3000445 | SCOP2B (2021-05-27) |
K | SCOP2B Superfamily | Aldolase | 8036477 | 3000445 | SCOP2B (2021-05-27) |
L | SCOP2B Superfamily | Aldolase | 8036477 | 3000445 | SCOP2B (2021-05-27) |
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
A | PF00793 | e2nxhA1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF00793 | ECOD (1.6) |
B | PF00793 | e2nxhB1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF00793 | ECOD (1.6) |
C | PF00793 | e2nxhC1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF00793 | ECOD (1.6) |
D | PF00793 | e2nxhD1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF00793 | ECOD (1.6) |
E | PF00793 | e2nxhE1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF00793 | ECOD (1.6) |
F | PF00793 | e2nxhF1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF00793 | ECOD (1.6) |
G | PF00793 | e2nxhG1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF00793 | ECOD (1.6) |
H | PF00793 | e2nxhH1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF00793 | ECOD (1.6) |
I | PF00793 | e2nxhI1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF00793 | ECOD (1.6) |
J | PF00793 | e2nxhJ1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF00793 | ECOD (1.6) |
K | PF00793 | e2nxhK1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF00793 | ECOD (1.6) |
L | PF00793 | e2nxhL1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF00793 | ECOD (1.6) |
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|
A, B, C, D, E, F, G, H, I, J, K, L | 2-dehydro-3-deoxyphosphooctonate aldolase | | | |
Chains | Accession | Name | Type |
---|
A, B, C, D, E, F, G, H, I, J, K, L | IPR006269 | 3-deoxy-8-phosphooctulonate synthase | Family |
A, B, C, D, E, F, G, H, I, J, K, L | IPR013785 | Aldolase-type TIM barrel | Homologous Superfamily |
A, B, C, D, E, F, G, H, I, J, K, L | IPR006218 | DAHP synthetase I/KDSA | Domain |