2O7D | pdb_00002o7d

Tyrosine ammonia-lyase from Rhodobacter sphaeroides, complexed with caffeate

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	L-aspartase-like	8078445	3001572	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	L-aspartase-like	8078445	3001572	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	L-aspartase-like	8078445	3001572	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	L-aspartase-like	8078445	3001572	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	L-aspartase-like	8078445	3001572	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	L-aspartase-like	8078445	3001572	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	L-aspartase-like	8078445	3001572	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	L-aspartase-like	8078445	3001572	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	ACR_tran	e2o7dB1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: ACR_tran	ECOD (develop294)
C	ACR_tran	e2o7dC1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: ACR_tran	ECOD (develop294)
D	ACR_tran	e2o7dD1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: ACR_tran	ECOD (develop294)
G	ACR_tran	e2o7dG1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: ACR_tran	ECOD (develop294)
H	ACR_tran	e2o7dH1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: ACR_tran	ECOD (develop294)
F	ACR_tran	e2o7dF1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: ACR_tran	ECOD (develop294)
E	ACR_tran	e2o7dE1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: ACR_tran	ECOD (develop294)
A	ACR_tran	e2o7dA1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: ACR_tran	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	1.10.275.10	Mainly Alpha	Orthogonal Bundle	Fumarase C	Chain B, domain 1	CATH (4.3.0)
B	1.20.200.10	Mainly Alpha	Up-down Bundle	Fumarase C	Chain A, domain 2	CATH (4.3.0)
C	1.10.275.10	Mainly Alpha	Orthogonal Bundle	Fumarase C	Chain B, domain 1	CATH (4.3.0)
C	1.20.200.10	Mainly Alpha	Up-down Bundle	Fumarase C	Chain A, domain 2	CATH (4.3.0)
D	1.10.275.10	Mainly Alpha	Orthogonal Bundle	Fumarase C	Chain B, domain 1	CATH (4.3.0)
D	1.20.200.10	Mainly Alpha	Up-down Bundle	Fumarase C	Chain A, domain 2	CATH (4.3.0)
G	1.10.275.10	Mainly Alpha	Orthogonal Bundle	Fumarase C	Chain B, domain 1	CATH (4.3.0)
G	1.20.200.10	Mainly Alpha	Up-down Bundle	Fumarase C	Chain A, domain 2	CATH (4.3.0)
H	1.10.275.10	Mainly Alpha	Orthogonal Bundle	Fumarase C	Chain B, domain 1	CATH (4.3.0)
H	1.20.200.10	Mainly Alpha	Up-down Bundle	Fumarase C	Chain A, domain 2	CATH (4.3.0)
F	1.10.275.10	Mainly Alpha	Orthogonal Bundle	Fumarase C	Chain B, domain 1	CATH (4.3.0)
F	1.20.200.10	Mainly Alpha	Up-down Bundle	Fumarase C	Chain A, domain 2	CATH (4.3.0)
E	1.10.275.10	Mainly Alpha	Orthogonal Bundle	Fumarase C	Chain B, domain 1	CATH (4.3.0)
E	1.20.200.10	Mainly Alpha	Up-down Bundle	Fumarase C	Chain A, domain 2	CATH (4.3.0)
A	1.10.275.10	Mainly Alpha	Orthogonal Bundle	Fumarase C	Chain B, domain 1	CATH (4.3.0)
A	1.20.200.10	Mainly Alpha	Up-down Bundle	Fumarase C	Chain A, domain 2	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H	PF00221	Aromatic amino acid lyase (Lyase_aromatic)	Aromatic amino acid lyase	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H	Putative histidine ammonia-lyase	tyrosine ammonia-lyase activity lyase activity ammonia-lyase activity catalytic activity carbon-nitrogen lyase activity identical protein binding protein binding binding	protein-containing complex organization protein homotetramerization cellular component organization cellular component biogenesis cellular component assembly protein complex oligomerization protein tetramerization protein-containing complex assembly protein homooligomerization cellular process cellular component organization or biogenesis catabolic process oxoacid metabolic process L-tyrosine catabolic process protein-containing complex organization protein homotetramerization cellular component organization cellular component biogenesis cellular component assembly protein complex oligomerization protein tetramerization protein-containing complex assembly protein homooligomerization cellular process cellular component organization or biogenesis catabolic process oxoacid metabolic process L-tyrosine catabolic process aromatic amino acid family catabolic process amino acid metabolic process organic acid catabolic process organic acid metabolic process alpha-amino acid metabolic process carboxylic acid catabolic process small molecule metabolic process tyrosine metabolic process amino acid catabolic process aromatic amino acid metabolic process L-amino acid catabolic process carboxylic acid metabolic process primary metabolic process L-amino acid metabolic process proteinogenic amino acid metabolic process alpha-amino acid catabolic process proteinogenic amino acid catabolic process metabolic process small molecule catabolic process phenylpropanoid metabolic process secondary metabolite biosynthetic process biosynthetic process phenylpropanoid biosynthetic process secondary metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR024083	Fumarase/histidase, N-terminal	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR001106	Aromatic amino acid lyase	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR022313	Phenylalanine/histidine ammonia-lyases, active site	Active Site
A, B, C, D, E A, B, C, D, E, F, G, H	IPR008948	L-Aspartase-like	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.