2RAQ | pdb_00002raq

Crystal structure of the MTH889 protein from Methanothermobacter thermautotrophicus. Northeast Structural Genomics Consortium target TT205

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2raqa1	Alpha and beta proteins (a+b)	Ferredoxin-like	MTH889-like	MTH889-like	Uncharacterized protein MTH889	(Methanothermobacter thermautotrophicus str. Delta H ) [TaxId: 187420 ],	SCOPe (2.08)
B	d2raqb_	Alpha and beta proteins (a+b)	Ferredoxin-like	MTH889-like	MTH889-like	Uncharacterized protein MTH889	(Methanothermobacter thermautotrophicus str. Delta H ) [TaxId: 187420 ],	SCOPe (2.08)
D	d2raqd_	Alpha and beta proteins (a+b)	Ferredoxin-like	MTH889-like	MTH889-like	Uncharacterized protein MTH889	(Methanothermobacter thermautotrophicus str. Delta H ) [TaxId: 187420 ],	SCOPe (2.08)
E	d2raqe_	Alpha and beta proteins (a+b)	Ferredoxin-like	MTH889-like	MTH889-like	Uncharacterized protein MTH889	(Methanothermobacter thermautotrophicus str. Delta H ) [TaxId: 187420 ],	SCOPe (2.08)
G	d2raqg_	Alpha and beta proteins (a+b)	Ferredoxin-like	MTH889-like	MTH889-like	Uncharacterized protein MTH889	(Methanothermobacter thermautotrophicus str. Delta H ) [TaxId: 187420 ],	SCOPe (2.08)
F	d2raqf_	Alpha and beta proteins (a+b)	Ferredoxin-like	MTH889-like	MTH889-like	Uncharacterized protein MTH889	(Methanothermobacter thermautotrophicus str. Delta H ) [TaxId: 187420 ],	SCOPe (2.08)
C	d2raqc_	Alpha and beta proteins (a+b)	Ferredoxin-like	MTH889-like	MTH889-like	Uncharacterized protein MTH889	(Methanothermobacter thermautotrophicus str. Delta H ) [TaxId: 187420 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	MTH889-like	8024371	4001992	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	MTH889-like	8036750	3000654	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	MTH889-like	8036750	3000654	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	MTH889-like	8036750	3000654	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	MTH889-like	8036750	3000654	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	MTH889-like	8036750	3000654	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	MTH889-like	8036750	3000654	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	MTH889-like	8036750	3000654	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	GATase_2	e2raqA1	A: alpha bundles	X: EGF-like	H: General secretion pathway protein M (EpsM) periplasmic domain-related	T: General secretion pathway protein M (EpsM) periplasmic domain-related	F: GATase_2	ECOD (develop294)
B	GATase_2	e2raqB1	A: alpha bundles	X: EGF-like	H: General secretion pathway protein M (EpsM) periplasmic domain-related	T: General secretion pathway protein M (EpsM) periplasmic domain-related	F: GATase_2	ECOD (develop294)
D	GATase_2	e2raqD1	A: alpha bundles	X: EGF-like	H: General secretion pathway protein M (EpsM) periplasmic domain-related	T: General secretion pathway protein M (EpsM) periplasmic domain-related	F: GATase_2	ECOD (develop294)
E	GATase_2	e2raqE1	A: alpha bundles	X: EGF-like	H: General secretion pathway protein M (EpsM) periplasmic domain-related	T: General secretion pathway protein M (EpsM) periplasmic domain-related	F: GATase_2	ECOD (develop294)
G	GATase_2	e2raqG1	A: alpha bundles	X: EGF-like	H: General secretion pathway protein M (EpsM) periplasmic domain-related	T: General secretion pathway protein M (EpsM) periplasmic domain-related	F: GATase_2	ECOD (develop294)
F	GATase_2	e2raqF1	A: alpha bundles	X: EGF-like	H: General secretion pathway protein M (EpsM) periplasmic domain-related	T: General secretion pathway protein M (EpsM) periplasmic domain-related	F: GATase_2	ECOD (develop294)
C	GATase_2	e2raqC1	A: alpha bundles	X: EGF-like	H: General secretion pathway protein M (EpsM) periplasmic domain-related	T: General secretion pathway protein M (EpsM) periplasmic domain-related	F: GATase_2	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.30.70.1340	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	MTH889-like domain	CATH (4.3.0)
B	3.30.70.1340	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	MTH889-like domain	CATH (4.3.0)
D	3.30.70.1340	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	MTH889-like domain	CATH (4.3.0)
E	3.30.70.1340	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	MTH889-like domain	CATH (4.3.0)
G	3.30.70.1340	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	MTH889-like domain	CATH (4.3.0)
F	3.30.70.1340	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	MTH889-like domain	CATH (4.3.0)
C	3.30.70.1340	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	MTH889-like domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G	PF02680	Uncharacterized ArCR, COG1888 (DUF211)	Uncharacterized ArCR, COG1888	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G	Conserved protein MTH889	cation binding ion binding binding metal ion binding small molecule binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G	IPR003831	Protein of unknown function DUF211	Family
A, B, C, D, E A, B, C, D, E, F, G	IPR023129	MTH889-like domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.