2RKZ
Crystal structure of the second and third fibronectin f1 modules in complex with a fragment of staphylococcus aureus fnbpa-1
External Resource: Annotation
- Domain Annotation: SCOP/SCOPe Classification
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Domain Annotation: CATH
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Pharos: Disease Associations
- Protein Modification Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d2rkza1 | Small proteins | FnI-like domain | FnI-like domain | Fibronectin type I module | Fibronectin | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
B | d2rkzb1 | Small proteins | FnI-like domain | FnI-like domain | Fibronectin type I module | Fibronectin | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
C | d2rkzc1 | Small proteins | FnI-like domain | FnI-like domain | Fibronectin type I module | Fibronectin | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
D | d2rkzd1 | Small proteins | FnI-like domain | FnI-like domain | Fibronectin type I module | Fibronectin | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
E | d2rkze1 | Small proteins | FnI-like domain | FnI-like domain | Fibronectin type I module | Fibronectin | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
F | d2rkzf1 | Small proteins | FnI-like domain | FnI-like domain | Fibronectin type I module | Fibronectin | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | FnI-like domain | 8038831 | 3000979 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | FnI-like domain | 8038827 | 3000979 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | FnI-like domain | 8038831 | 3000979 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | FnI-like domain | 8038827 | 3000979 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | FnI-like domain | 8038827 | 3000979 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | FnI-like domain | 8038831 | 3000979 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | FnI-like domain | 8038827 | 3000979 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | FnI-like domain | 8038831 | 3000979 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | FnI-like domain | 8038831 | 3000979 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | FnI-like domain | 8038827 | 3000979 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | FnI-like domain | 8038831 | 3000979 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | fn1_1 | e2rkzA2 | A: few secondary structure elements | X: Fibronectin type I module-like (From Homology) | H: Fibronectin type I module-like | T: Fibronectin type I module | F: fn1_1 | ECOD (1.6) |
A | fn1 | e2rkzA1 | A: few secondary structure elements | X: Fibronectin type I module-like (From Homology) | H: Fibronectin type I module-like | T: Fibronectin type I module | F: fn1 | ECOD (1.6) |
B | fn1_1 | e2rkzB2 | A: few secondary structure elements | X: Fibronectin type I module-like (From Homology) | H: Fibronectin type I module-like | T: Fibronectin type I module | F: fn1_1 | ECOD (1.6) |
B | fn1 | e2rkzB1 | A: few secondary structure elements | X: Fibronectin type I module-like (From Homology) | H: Fibronectin type I module-like | T: Fibronectin type I module | F: fn1 | ECOD (1.6) |
C | fn1_1 | e2rkzC2 | A: few secondary structure elements | X: Fibronectin type I module-like (From Homology) | H: Fibronectin type I module-like | T: Fibronectin type I module | F: fn1_1 | ECOD (1.6) |
C | fn1 | e2rkzC1 | A: few secondary structure elements | X: Fibronectin type I module-like (From Homology) | H: Fibronectin type I module-like | T: Fibronectin type I module | F: fn1 | ECOD (1.6) |
D | fn1_1 | e2rkzD2 | A: few secondary structure elements | X: Fibronectin type I module-like (From Homology) | H: Fibronectin type I module-like | T: Fibronectin type I module | F: fn1_1 | ECOD (1.6) |
D | fn1 | e2rkzD1 | A: few secondary structure elements | X: Fibronectin type I module-like (From Homology) | H: Fibronectin type I module-like | T: Fibronectin type I module | F: fn1 | ECOD (1.6) |
E | fn1_1 | e2rkzE2 | A: few secondary structure elements | X: Fibronectin type I module-like (From Homology) | H: Fibronectin type I module-like | T: Fibronectin type I module | F: fn1_1 | ECOD (1.6) |
E | fn1 | e2rkzE1 | A: few secondary structure elements | X: Fibronectin type I module-like (From Homology) | H: Fibronectin type I module-like | T: Fibronectin type I module | F: fn1 | ECOD (1.6) |
F | fn1_1 | e2rkzF2 | A: few secondary structure elements | X: Fibronectin type I module-like (From Homology) | H: Fibronectin type I module-like | T: Fibronectin type I module | F: fn1_1 | ECOD (1.6) |
F | fn1 | e2rkzF1 | A: few secondary structure elements | X: Fibronectin type I module-like (From Homology) | H: Fibronectin type I module-like | T: Fibronectin type I module | F: fn1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.10.70.10 | Mainly Beta | Ribbon | Complement Module | domain 1 | CATH (4.3.0) |
B | 2.10.70.10 | Mainly Beta | Ribbon | Complement Module | domain 1 | CATH (4.3.0) |
C | 2.10.70.10 | Mainly Beta | Ribbon | Complement Module | domain 1 | CATH (4.3.0) |
D | 2.10.70.10 | Mainly Beta | Ribbon | Complement Module | domain 1 | CATH (4.3.0) |
E | 2.10.70.10 | Mainly Beta | Ribbon | Complement Module | domain 1 | CATH (4.3.0) |
F | 2.10.70.10 | Mainly Beta | Ribbon | Complement Module | domain 1 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR000562 | Fibronectin type II domain | Domain | |
IPR000083 | Fibronectin, type I | Domain | |
IPR013783 | Immunoglobulin-like fold | Homologous Superfamily | |
IPR036943 | Fibronectin type II domain superfamily | Homologous Superfamily | |
IPR013806 | Kringle-like fold | Homologous Superfamily | |
IPR003961 | Fibronectin type III | Domain | |
IPR050991 | Extracellular Matrix Regulatory Proteins | Family | |
IPR036116 | Fibronectin type III superfamily | Homologous Superfamily | |
IPR052506 | Bacterial Fibronectin-Binding | Family | |
IPR004237 | Fibronectin binding repeat | Repeat | |
IPR011252 | Fibrogen-binding domain 1 | Homologous Superfamily | |
IPR011266 | Fibrinogen-binding domain 2 | Domain | |
IPR005877 | YSIRK Gram-positive signal peptide | Domain | |
IPR008966 | Adhesion domain superfamily | Homologous Superfamily | |
IPR019931 | LPXTG cell wall anchor domain | Domain | |
IPR041171 | SDR-like Ig domain | Domain |
Pharos: Disease Associations Pharos Homepage Annotation
Protein Modification Annotation
Modified Residue(s) | ||
---|---|---|
Chain | Residue(s) | Description |
ACE | AA0041 , AA0042 , AA0043 , AA0044 , AA0045 , AA0046 , AA0049 , AA0050 , AA0051 , AA0052 , AA0053 , AA0054 , AA0354 :  N-acetyl-L-alanine MOD:00050 , N-acetyl-L-aspartic acid MOD:00051 , N-acetyl-L-cysteine MOD:00052 , N-acetyl-S-archeol-cysteine MOD:00897 , N-acetyl-L-glutamic acid MOD:00053 , N-acetyl-L-glutamine MOD:00054 , N-acetylglycine MOD:00055 , N-acetyl-L-methionine MOD:00058 , N-acetyl-L-proline MOD:00059 , N-acetyl-L-serine MOD:00060 , N,O-diacetylated L-serine MOD:00648 , N-acetyl-L-threonine MOD:00061 , N-acetyl-L-tyrosine MOD:00062 , N-acetyl-L-valine MOD:00063 , N2-acetyl-L-arginine MOD:00359 | :  |
NH2 | AA0041 , AA0042 , AA0043 , AA0044 , AA0045 , AA0046 , AA0049 , AA0050 , AA0051 , AA0052 , AA0053 , AA0054 , AA0354 , AA0081 , AA0083 , AA0084 , AA0086 , AA0087 , AA0088 , AA0090 , AA0091 , AA0092 , AA0093 , AA0095 , AA0096 , AA0097 , AA0098 , AA0099 , AA0100 :  N-acetyl-L-alanine MOD:00050 , N-acetyl-L-aspartic acid MOD:00051 , N-acetyl-L-cysteine MOD:00052 , N-acetyl-S-archeol-cysteine MOD:00897 , N-acetyl-L-glutamic acid MOD:00053 , N-acetyl-L-glutamine MOD:00054 , N-acetylglycine MOD:00055 , N-acetyl-L-methionine MOD:00058 , N-acetyl-L-proline MOD:00059 , N-acetyl-L-serine MOD:00060 , N,O-diacetylated L-serine MOD:00648 , N-acetyl-L-threonine MOD:00061 , N-acetyl-L-tyrosine MOD:00062 , N-acetyl-L-valine MOD:00063 , N2-acetyl-L-arginine MOD:00359 , L-alanine amide MOD:00090 , L-asparagine amide MOD:00092 , L-aspartic acid 1-amide MOD:00093 , L-glutamine amide MOD:00095 , L-glutamic acid 1-amide MOD:00096 , glycine amide MOD:00097 , L-isoleucine amide MOD:00099 , L-leucine amide MOD:00100 , L-lysine amide MOD:00101 , L-methionine amide MOD:00102 , L-proline amide MOD:00104 , L-serine amide MOD:00105 , L-threonine amide MOD:00106 , L-tryptophan amide MOD:00107 , L-tyrosine amide MOD:00108 , L-valine amide MOD:00109 | :