2TNF

1.4 A RESOLUTION STRUCTURE OF MOUSE TUMOR NECROSIS FACTOR, TOWARDS MODULATION OF ITS SELECTIVITY AND TRIMERISATION

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2tnfa_	All beta proteins	TNF-like	TNF-like	TNF-like	Tumor necrosis factor (TNF)	house mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
B	d2tnfb_	All beta proteins	TNF-like	TNF-like	TNF-like	Tumor necrosis factor (TNF)	house mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
C	d2tnfc_	All beta proteins	TNF-like	TNF-like	TNF-like	Tumor necrosis factor (TNF)	house mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	TNF-like	8028854	4000294	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	TNF-like	8041233	3000061	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	TNF-like	8041233	3000061	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	TNF-like	8041233	3000061	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	TNF	e2tnfA1	A: beta sandwiches	X: jelly-roll	H: TNF-like (From Topology)	T: TNF-like	F: TNF	ECOD (1.6)
B	TNF	e2tnfB1	A: beta sandwiches	X: jelly-roll	H: TNF-like (From Topology)	T: TNF-like	F: TNF	ECOD (1.6)
C	TNF	e2tnfC1	A: beta sandwiches	X: jelly-roll	H: TNF-like (From Topology)	T: TNF-like	F: TNF	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.60.120.40	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
B	2.60.120.40	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
C	2.60.120.40	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C	PF00229	TNF(Tumour Necrosis Factor) family (TNF)	TNF(Tumour Necrosis Factor) family	-	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C	PROTEIN (TUMOR NECROSIS FACTOR ALPHA)	protein binding binding molecular function activator activity signaling receptor binding death receptor agonist activity molecular function regulator activity signaling receptor regulator activity receptor ligand activity signaling receptor activator activity enzyme binding protease binding cytokine receptor binding tumor necrosis factor receptor superfamily binding tumor necrosis factor receptor binding protein binding binding molecular function activator activity signaling receptor binding death receptor agonist activity molecular function regulator activity signaling receptor regulator activity receptor ligand activity signaling receptor activator activity enzyme binding protease binding cytokine receptor binding tumor necrosis factor receptor superfamily binding tumor necrosis factor receptor binding DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding double-stranded DNA binding organic cyclic compound binding nucleic acid binding transcription regulatory region nucleic acid binding identical protein binding cytokine activity	regulation of biosynthetic process regulation of nitric oxide biosynthetic process regulation of biological process biological regulation positive regulation of biological process reactive nitrogen species metabolic process positive regulation of nitric oxide metabolic process nitric oxide metabolic process positive regulation of metabolic process nitric oxide biosynthetic process biosynthetic process positive regulation of biosynthetic process metabolic process regulation of nitric oxide metabolic process regulation of biosynthetic process regulation of nitric oxide biosynthetic process regulation of biological process biological regulation positive regulation of biological process reactive nitrogen species metabolic process positive regulation of nitric oxide metabolic process nitric oxide metabolic process positive regulation of metabolic process nitric oxide biosynthetic process biosynthetic process positive regulation of biosynthetic process metabolic process regulation of nitric oxide metabolic process positive regulation of nitric oxide biosynthetic process regulation of metabolic process cellular component disassembly positive regulation of cellular component organization regulation of cellular process regulation of cellular component organization protein-containing complex organization protein-containing complex disassembly regulation of protein-containing complex disassembly cellular component organization cellular process cellular component organization or biogenesis positive regulation of protein-containing complex disassembly positive regulation of cellular process response to stimulus response to chemical response to xenobiotic stimulus positive regulation of protein localization to plasma membrane protein localization regulation of localization cellular localization regulation of protein localization localization cellular macromolecule localization regulation of protein localization to membrane positive regulation of protein localization to cell periphery protein localization to cell periphery protein localization to plasma membrane positive regulation of protein localization to membrane localization within membrane regulation of protein localization to cell periphery protein localization to membrane regulation of cellular localization macromolecule localization positive regulation of protein localization regulation of protein localization to plasma membrane extracellular matrix organization extracellular structure organization external encapsulating structure organization positive regulation of phosphorylation regulation of protein modification process regulation of protein phosphorylation positive regulation of protein metabolic process regulation of peptidyl-serine phosphorylation positive regulation of cellular metabolic process positive regulation of phosphate metabolic process peptidyl-serine modification regulation of primary metabolic process positive regulation of protein modification process peptidyl-serine phosphorylation regulation of phosphate metabolic process phosphate-containing compound metabolic process peptidyl-amino acid modification positive regulation of macromolecule metabolic process protein metabolic process positive regulation of protein phosphorylation phosphorus metabolic process protein modification process protein phosphorylation positive regulation of phosphorus metabolic process phosphorylation cellular metabolic process regulation of protein metabolic process regulation of cellular metabolic process primary metabolic process regulation of macromolecule metabolic process positive regulation of peptidyl-serine phosphorylation macromolecule modification regulation of phosphorus metabolic process regulation of phosphorylation macromolecule metabolic process cellular response to stimulus response to lipid response to oxygen-containing compound cellular response to oxygen-containing compound response to retinoic acid cellular response to chemical stimulus cellular response to retinoic acid cellular response to lipid multicellular organismal process regulation of immune effector process negative regulation of biological process negative regulation of cellular metabolic process cytokine production regulation of immune system process negative regulation of cytokine production involved in immune response regulation of cytokine production involved in immune response immune response negative regulation of metabolic process negative regulation of immune effector process negative regulation of cellular biosynthetic process immune effector process regulation of gene expression negative regulation of production of molecular mediator of immune response negative regulation of gene expression negative regulation of macromolecule biosynthetic process regulation of macromolecule biosynthetic process regulation of production of molecular mediator of immune response negative regulation of multicellular organismal process cellular biosynthetic process negative regulation of cellular process regulation of cytokine production regulation of multicellular organismal process cytokine production involved in immune response negative regulation of macromolecule metabolic process production of molecular mediator of immune response negative regulation of cytokine production gene expression macromolecule biosynthetic process regulation of cellular biosynthetic process negative regulation of immune system process negative regulation of biosynthetic process immune system process response to hexose response to monosaccharide response to carbohydrate response to fructose biological process involved in interspecies interaction between organisms response to other organism defense response response to external stimulus response to biotic stimulus defense response to bacterium defense response to other organism response to stress response to bacterium response to external biotic stimulus leukocyte migration cell migration inflammatory response leukocyte migration involved in inflammatory response cell motility positive regulation of macromolecule biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription regulation of RNA metabolic process regulation of miRNA metabolic process regulation of nucleobase-containing compound metabolic process miRNA metabolic process positive regulation of nucleobase-containing compound metabolic process positive regulation of RNA metabolic process regulation of DNA-templated transcription positive regulation of DNA-templated transcription RNA metabolic process positive regulation of miRNA transcription positive regulation of miRNA metabolic process RNA biosynthetic process nucleic acid biosynthetic process miRNA transcription regulation of RNA biosynthetic process nucleobase-containing compound biosynthetic process nucleic acid metabolic process positive regulation of RNA biosynthetic process positive regulation of cellular biosynthetic process regulation of miRNA transcription positive regulation of organelle organization regulation of mitotic nuclear division positive regulation of mitotic nuclear division mitotic cell cycle regulation of mitotic cell cycle positive regulation of cell cycle process cell cycle regulation of cell cycle cell cycle process mitotic nuclear division regulation of cell cycle process organelle fission positive regulation of nuclear division regulation of organelle organization positive regulation of cell cycle organelle organization nuclear division mitotic cell cycle process regulation of nuclear division response to Gram-negative bacterium positive regulation of interleukin-8 production interleukin-8 production positive regulation of gene expression positive regulation of multicellular organismal process positive regulation of cytokine production regulation of interleukin-8 production response to transition metal nanoparticle response to gold nanoparticle signaling intracellular signal transduction cell communication JNK cascade intracellular signaling cassette MAPK cascade signal transduction cellular response to toxic substance response to toxic substance positive regulation of cell adhesion regulation of cell adhesion positive regulation of cell-cell adhesion heterotypic cell-cell adhesion cell adhesion cell-cell adhesion positive regulation of heterotypic cell-cell adhesion regulation of cell-cell adhesion regulation of heterotypic cell-cell adhesion inflammatory response to wounding response to wounding negative regulation of RNA biosynthetic process transcription by RNA polymerase II negative regulation of nucleobase-containing compound metabolic process regulation of transcription by RNA polymerase II negative regulation of DNA-templated transcription negative regulation of transcription by RNA polymerase II negative regulation of RNA metabolic process positive regulation of response to biotic stimulus pattern recognition receptor signaling pathway immune response-activating signaling pathway positive regulation of immune response positive regulation of immune system process innate immune response-activating signaling pathway regulation of innate immune response regulation of response to stimulus positive regulation of defense response activation of innate immune response regulation of immune response activation of immune response cytoplasmic pattern recognition receptor signaling pathway regulation of defense response regulation of response to biotic stimulus regulation of response to external stimulus intracellular receptor signaling pathway positive regulation of response to stimulus endolysosomal toll-like receptor signaling pathway positive regulation of response to external stimulus immune response-regulating signaling pathway regulation of response to stress innate immune response positive regulation of innate immune response defense response to symbiont toll-like receptor 3 signaling pathway response to peptide response to cytokine response to macrophage colony-stimulating factor cell activation myeloid leukocyte activation leukocyte activation macrophage activation leukocyte activation involved in inflammatory response microglial cell activation glial cell activation neuroinflammatory response positive regulation of cell communication trans-synaptic signaling regulation of signaling modulation of chemical synaptic transmission positive regulation of synaptic transmission cell-cell signaling chemical synaptic transmission synaptic signaling regulation of trans-synaptic signaling anterograde trans-synaptic signaling regulation of cell communication positive regulation of signaling developmental process fat cell differentiation regulation of developmental process cellular developmental process negative regulation of developmental process regulation of cell differentiation negative regulation of fat cell differentiation cell differentiation negative regulation of cell differentiation regulation of fat cell differentiation positive regulation of signal transduction positive regulation of canonical NF-kappaB signal transduction regulation of signal transduction regulation of intracellular signal transduction positive regulation of intracellular signal transduction canonical NF-kappaB signal transduction regulation of canonical NF-kappaB signal transduction regulation of fractalkine production fractalkine production regulation of chemokine production positive regulation of fractalkine production chemokine production positive regulation of chemokine production rhythmic process circadian rhythm negative regulation of extrinsic apoptotic signaling pathway in absence of ligand signal transduction in absence of ligand negative regulation of signaling regulation of programmed cell death negative regulation of cell communication extrinsic apoptotic signaling pathway negative regulation of signal transduction in absence of ligand negative regulation of extrinsic apoptotic signaling pathway negative regulation of apoptotic signaling pathway extrinsic apoptotic signaling pathway in absence of ligand cell surface receptor signaling pathway negative regulation of response to stimulus negative regulation of programmed cell death regulation of apoptotic process cell death negative regulation of signal transduction regulation of extrinsic apoptotic signaling pathway apoptotic signaling pathway negative regulation of apoptotic process regulation of extrinsic apoptotic signaling pathway in absence of ligand apoptotic process programmed cell death regulation of apoptotic signaling pathway detection of external stimulus detection of stimulus involved in sensory perception of pain system process detection of mechanical stimulus involved in sensory perception of pain nervous system process response to mechanical stimulus sensory perception of pain detection of mechanical stimulus involved in sensory perception sensory perception of mechanical stimulus detection of abiotic stimulus detection of stimulus sensory perception detection of mechanical stimulus response to abiotic stimulus detection of stimulus involved in sensory perception regulation of lipid metabolic process positive regulation of lipid metabolic process lipid metabolic process negative regulation of cellular component organization negative regulation of protein-containing complex disassembly response to activity regulation of amide metabolic process positive regulation of amide metabolic process amide metabolic process calcineurin-NFAT signaling cascade regulation of calcineurin-mediated signaling positive regulation of calcineurin-NFAT signaling cascade regulation of calcium-mediated signaling positive regulation of calcium-mediated signaling regulation of calcineurin-NFAT signaling cascade positive regulation of calcineurin-mediated signaling calcium-mediated signaling calcineurin-mediated signaling multicellular organismal movement musculoskeletal movement neuromuscular process skeletal muscle contraction muscle contraction muscle system process striated muscle contraction positive regulation of apoptotic signaling pathway positive regulation of programmed cell death positive regulation of extrinsic apoptotic signaling pathway positive regulation of apoptotic process regulation of synapse organization cell junction organization regulation of synapse structure or activity synapse organization regulation of biological quality gland development animal organ development animal organ regeneration liver development regeneration multicellular organism development hepaticobiliary system development anatomical structure development liver regeneration system development bicellular tight junction assembly tight junction organization cellular component biogenesis cellular component assembly negative regulation of cell junction assembly cell junction assembly cell-cell junction assembly cell-cell junction organization regulation of bicellular tight junction assembly apical junction assembly regulation of cellular component biogenesis regulation of cell junction assembly tight junction assembly negative regulation of bicellular tight junction assembly blood microparticle formation positive regulation of developmental process anatomical structure morphogenesis regulation of blood microparticle formation anatomical structure formation involved in morphogenesis positive regulation of blood microparticle formation regulation of action potential positive regulation of action potential action potential regulation of membrane potential cell population proliferation positive regulation of cell population proliferation regulation of cell population proliferation amyloid precursor protein catabolic process regulation of amyloid-beta formation positive regulation of amyloid-beta formation regulation of amyloid precursor protein catabolic process amyloid-beta metabolic process amyloid precursor protein metabolic process amyloid-beta formation positive regulation of amyloid precursor protein catabolic process regulation of catalytic activity regulation of transferase activity regulation of MAP kinase activity positive regulation of protein serine/threonine kinase activity positive regulation of MAP kinase activity positive regulation of MAPK cascade regulation of MAPK cascade regulation of molecular function positive regulation of kinase activity regulation of kinase activity regulation of protein serine/threonine kinase activity positive regulation of molecular function positive regulation of protein kinase activity positive regulation of transferase activity positive regulation of catalytic activity regulation of protein kinase activity response to 3,3',5-triiodo-L-thyronine response to acid chemical response to nitrogen compound response to amino acid response to organic cyclic compound response to type II interferon cellular response to type II interferon cellular response to cytokine stimulus angiogenesis regulation of vasculature development regulation of response to wounding tube morphogenesis vascular wound healing regulation of anatomical structure morphogenesis blood vessel development wound healing regulation of multicellular organismal development blood vessel morphogenesis tube development negative regulation of blood vessel morphogenesis negative regulation of wound healing angiogenesis involved in wound healing negative regulation of angiogenesis negative regulation of response to wounding vasculature development circulatory system development negative regulation of vasculature development regulation of angiogenesis negative regulation of response to external stimulus regulation of wound healing negative regulation of vascular wound healing regulation of vascular wound healing myeloid leukocyte differentiation regulation of leukocyte differentiation cell development regulation of cell development regulation of osteoclast differentiation osteoclast differentiation hemopoiesis regulation of myeloid cell differentiation regulation of myeloid leukocyte differentiation myeloid cell differentiation regulation of hemopoiesis leukocyte differentiation cellular response to nicotine response to nicotine immunoglobulin production regulation of immunoglobulin production response to isolation stress regulation of non-canonical NF-kappaB signal transduction non-canonical NF-kappaB signal transduction positive regulation of non-canonical NF-kappaB signal transduction negative regulation of viral genome replication viral life cycle negative regulation of viral process regulation of viral process regulation of viral life cycle viral genome replication viral process regulation of viral genome replication regulation of systemic arterial blood pressure circulatory system process regulation of blood pressure negative regulation of systemic arterial blood pressure blood circulation negative regulation of blood pressure regulation of cytokine production involved in inflammatory response production of molecular mediator involved in inflammatory response cytokine production involved in inflammatory response positive regulation of cytokine production involved in inflammatory response heart process negative regulation of heart rate regulation of heart contraction regulation of system process negative regulation of blood circulation negative regulation of heart contraction regulation of blood circulation heart contraction regulation of heart rate positive regulation of interleukin-18 production regulation of interleukin-18 production interleukin-18 production positive regulation of nervous system development regulation of neurogenesis regulation of gliogenesis positive regulation of glial cell proliferation positive regulation of gliogenesis regulation of nervous system development neurogenesis regulation of glial cell proliferation gliogenesis positive regulation of cell differentiation positive regulation of neurogenesis positive regulation of cell development nervous system development glial cell proliferation cellular response to nitrogen compound cellular response to amyloid-beta response to amyloid-beta response to lipopolysaccharide response to molecule of bacterial origin negative regulation of cell population proliferation endothelial cell proliferation negative regulation of endothelial cell proliferation regulation of endothelial cell proliferation regulation of epithelial cell proliferation epithelial cell proliferation negative regulation of epithelial cell proliferation regulation of type II interferon production type II interferon production positive regulation of type II interferon production leukocyte tethering or rolling leukocyte cell-cell adhesion leukocyte adhesion to vascular endothelial cell cellular extravasation endothelial cell apoptotic process negative regulation of hydrolase activity regulation of phosphatase activity negative regulation of catalytic activity negative regulation of phosphate metabolic process negative regulation of alkaline phosphatase activity regulation of alkaline phosphatase activity negative regulation of phosphatase activity negative regulation of dephosphorylation regulation of dephosphorylation dephosphorylation negative regulation of molecular function regulation of hydrolase activity negative regulation of phosphorus metabolic process positive regulation of epithelial cell proliferation regulation of synoviocyte proliferation synoviocyte proliferation positive regulation of synoviocyte proliferation fat-soluble vitamin metabolic process vitamin biosynthetic process vitamin D biosynthetic process positive regulation of vitamin metabolic process regulation of small molecule metabolic process small molecule metabolic process regulation of vitamin metabolic process positive regulation of vitamin D biosynthetic process positive regulation of steroid biosynthetic process regulation of steroid biosynthetic process steroid metabolic process organic hydroxy compound metabolic process lipid biosynthetic process steroid biosynthetic process small molecule biosynthetic process regulation of steroid metabolic process vitamin D metabolic process regulation of vitamin D biosynthetic process vitamin metabolic process positive regulation of lipid biosynthetic process organic hydroxy compound biosynthetic process fat-soluble vitamin biosynthetic process positive regulation of steroid metabolic process regulation of lipid biosynthetic process positive regulation of small molecule metabolic process neutrophil activation regulation of leukocyte activation regulation of neutrophil activation regulation of cell activation positive regulation of cell activation positive regulation of leukocyte activation positive regulation of neutrophil activation granulocyte activation interleukin-6 production regulation of interleukin-6 production negative regulation of interleukin-6 production establishment of protein localization nitrogen compound transport transport protein localization to extracellular region regulation of secretion by cell secretion by cell regulation of transport secretion regulation of establishment of protein localization establishment of protein localization to extracellular region export from cell regulation of protein transport protein secretion establishment of localization regulation of protein secretion regulation of secretion protein transport positive regulation of chronic inflammatory response chronic inflammatory response regulation of chronic inflammatory response to antigenic stimulus inflammatory response to antigenic stimulus positive regulation of inflammatory response positive regulation of chronic inflammatory response to antigenic stimulus regulation of chronic inflammatory response regulation of inflammatory response to antigenic stimulus chronic inflammatory response to antigenic stimulus regulation of inflammatory response positive regulation of inflammatory response to antigenic stimulus positive regulation of leukocyte cell-cell adhesion positive regulation of leukocyte adhesion to vascular endothelial cell regulation of leukocyte adhesion to vascular endothelial cell positive regulation of leukocyte adhesion to arterial endothelial cell regulation of leukocyte adhesion to arterial endothelial cell leukocyte adhesion to arterial endothelial cell regulation of leukocyte cell-cell adhesion neuron apoptotic process positive regulation of neuron apoptotic process regulation of neuron apoptotic process negative regulation of nervous system process regulation of myelination axon ensheathment ensheathment of neurons regulation of nervous system process myelination negative regulation of myelination necroptotic process programmed necrotic cell death necroptotic signaling pathway extrinsic apoptotic signaling pathway via death domain receptors interleukin-1 production regulation of interleukin-1 beta production positive regulation of interleukin-1 beta production positive regulation of interleukin-1 production regulation of interleukin-1 production interleukin-1 beta production monosaccharide metabolic process carbohydrate metabolic process hexose metabolic process glucose metabolic process response to peptide hormone insulin receptor signaling pathway regulation of cellular response to insulin stimulus cell surface receptor protein tyrosine kinase signaling pathway cellular response to endogenous stimulus response to hormone enzyme-linked receptor protein signaling pathway cellular response to hormone stimulus response to endogenous stimulus regulation of insulin receptor signaling pathway cellular response to peptide hormone stimulus negative regulation of cellular response to insulin stimulus negative regulation of insulin receptor signaling pathway response to insulin cellular response to insulin stimulus chemokine (C-X-C motif) ligand 2 production regulation of chemokine (C-X-C motif) ligand 2 production positive regulation of chemokine (C-X-C motif) ligand 2 production positive regulation of JNK cascade regulation of JNK cascade macrophage activation involved in immune response cell activation involved in immune response myeloid cell activation involved in immune response leukocyte activation involved in immune response regulation of peptide hormone secretion regulation of hormone levels regulation of hormone secretion regulation of peptide secretion hormone secretion peptide secretion amide transport signal release regulation of peptide transport peptide transport regulation of insulin secretion peptide hormone secretion hormone transport insulin secretion negative regulation of locomotion regulation of cell motility regulation of blood vessel endothelial cell migration endothelial cell migration negative regulation of endothelial cell migration negative regulation of blood vessel endothelial cell migration regulation of locomotion regulation of cell migration blood vessel endothelial cell migration regulation of endothelial cell migration negative regulation of cell motility locomotion negative regulation of cell migration positive regulation of DNA-binding transcription factor activity positive regulation of NF-kappaB transcription factor activity regulation of DNA-binding transcription factor activity actin cytoskeleton organization cortical actin cytoskeleton organization cortical cytoskeleton organization actin filament-based process cytoskeleton organization cellular response to acid chemical cellular response to amino acid stimulus membrane lipid metabolic process regulation of membrane lipid metabolic process cellular lipid metabolic process positive regulation of protein localization to cell surface protein localization to cell surface regulation of protein localization to cell surface response to decreased oxygen levels response to hypoxia response to oxygen levels cytokine-mediated signaling pathway cellular response to tumor necrosis factor tumor necrosis factor-mediated signaling pathway response to tumor necrosis factor positive regulation of JUN kinase activity regulation of JUN kinase activity response to L-glutamate I-kappaB phosphorylation positive regulation of I-kappaB phosphorylation regulation of I-kappaB phosphorylation non-membrane-bounded organelle assembly positive regulation of podosome assembly positive regulation of protein-containing complex assembly regulation of protein-containing complex assembly regulation of podosome assembly protein-containing complex assembly organelle assembly podosome assembly positive regulation of cellular component biogenesis regulation of organelle assembly positive regulation of organelle assembly response to nutrient levels negative regulation of catabolic process lipid catabolic process catabolic process regulation of catabolic process regulation of lipid catabolic process negative regulation of lipid metabolic process negative regulation of lipid catabolic process negative regulation of branching involved in lung morphogenesis branching morphogenesis of an epithelial tube respiratory tube development regulation of branching involved in lung morphogenesis lung morphogenesis lung development respiratory system development animal organ morphogenesis regulation of morphogenesis of an epithelium epithelial tube morphogenesis regulation of morphogenesis of a branching structure epithelium development morphogenesis of an epithelium tissue development tissue morphogenesis morphogenesis of a branching structure negative regulation of morphogenesis of an epithelium epithelial tube branching involved in lung morphogenesis morphogenesis of a branching epithelium positive regulation of membrane protein ectodomain proteolysis macromolecule catabolic process cellular catabolic process regulation of proteolysis proteolysis membrane protein proteolysis membrane protein ectodomain proteolysis regulation of membrane protein ectodomain proteolysis protein catabolic process positive regulation of protein catabolic process positive regulation of catabolic process positive regulation of proteolysis regulation of cellular catabolic process positive regulation of cellular catabolic process regulation of protein catabolic process positive regulation of transcription by RNA polymerase II regulation of endothelial cell apoptotic process humoral immune response phosphatidylinositol 3-kinase/protein kinase B signal transduction vascular endothelial growth factor production positive regulation of interleukin-6 production muscle structure development negative regulation of myoblast differentiation regulation of myoblast differentiation myoblast differentiation regulation of osteoblast differentiation negative regulation of osteoblast differentiation osteoblast differentiation ossification salivary gland development gland morphogenesis epithelial cell proliferation involved in salivary gland morphogenesis salivary gland morphogenesis exocrine system development bile acid secretion organic anion transport carboxylic acid transport negative regulation of bile acid secretion negative regulation of transport acid secretion organic acid transport negative regulation of secretion monocarboxylic acid transport regulation of bile acid secretion negative regulation of organic acid transport regulation of organic acid transport positive regulation of establishment of protein localization positive regulation of protein transport positive regulation of transport digestive system development embryo development digestive tract development embryonic organ development embryonic digestive tract development hexose transmembrane transport D-glucose import carbohydrate transport negative regulation of transmembrane transport negative regulation of D-glucose import regulation of D-glucose import negative regulation of D-glucose transmembrane transport transmembrane transport regulation of transmembrane transport D-glucose transmembrane transport regulation of D-glucose transmembrane transport monosaccharide transmembrane transport carbohydrate transmembrane transport adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains regulation of humoral immune response lymphocyte mediated immunity positive regulation of leukocyte mediated immunity regulation of humoral immune response mediated by circulating immunoglobulin positive regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains positive regulation of lymphocyte mediated immunity positive regulation of B cell mediated immunity humoral immune response mediated by circulating immunoglobulin positive regulation of humoral immune response regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains regulation of immunoglobulin mediated immune response leukocyte mediated immunity positive regulation of immune effector process positive regulation of adaptive immune response positive regulation of immunoglobulin mediated immune response positive regulation of humoral immune response mediated by circulating immunoglobulin regulation of adaptive immune response immunoglobulin mediated immune response adaptive immune response regulation of B cell mediated immunity regulation of leukocyte mediated immunity regulation of lymphocyte mediated immunity B cell mediated immunity regulation of vascular associated smooth muscle cell proliferation positive regulation of vascular associated smooth muscle cell proliferation regulation of smooth muscle cell proliferation smooth muscle cell proliferation positive regulation of smooth muscle cell proliferation muscle cell proliferation vascular associated smooth muscle cell proliferation cellular response to lipopolysaccharide cellular response to molecule of bacterial origin cellular response to biotic stimulus aerobic respiration cellular respiration oxidative phosphorylation energy derivation by oxidation of organic compounds negative regulation of cellular respiration regulation of generation of precursor metabolites and energy regulation of cellular respiration negative regulation of oxidative phosphorylation generation of precursor metabolites and energy regulation of aerobic respiration regulation of oxidative phosphorylation regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction positive regulation of interleukin-33 production regulation of interleukin-33 production interleukin-33 production response to corticosteroid response to steroid hormone response to glucocorticoid response to alcohol response to ethanol regulation of tube diameter regulation of tube size vascular process in circulatory system blood vessel diameter maintenance vasodilation regulation of anatomical structure size cellular response to stress DNA damage response intrinsic apoptotic signaling pathway in response to DNA damage intrinsic apoptotic signaling pathway regulation of hepatocyte proliferation liver morphogenesis epithelial cell proliferation involved in liver morphogenesis hepatocyte proliferation positive regulation of hepatocyte proliferation defense response to virus antiviral innate immune response response to virus epidermis development molting cycle process regulation of hair cycle skin epidermis development hair follicle development hair cycle positive regulation of hair follicle development skin development molting cycle regulation of hair follicle development hair cycle process tyrosine phosphorylation of STAT protein cell surface receptor signaling pathway via STAT peptidyl-tyrosine modification positive regulation of peptidyl-tyrosine phosphorylation regulation of tyrosine phosphorylation of STAT protein regulation of peptidyl-tyrosine phosphorylation positive regulation of tyrosine phosphorylation of STAT protein peptidyl-tyrosine phosphorylation cell surface receptor signaling pathway via JAK-STAT positive regulation of receptor signaling pathway via STAT positive regulation of receptor signaling pathway via JAK-STAT regulation of receptor signaling pathway via JAK-STAT regulation of receptor signaling pathway via STAT regulation of establishment of endothelial barrier endothelium development epithelial cell differentiation regulation of epithelial cell differentiation endothelial cell development regulation of endothelial cell development endothelial cell differentiation regulation of endothelial cell differentiation epithelial cell development establishment of endothelial barrier regulation of DNA biosynthetic process positive regulation of DNA biosynthetic process DNA metabolic process positive regulation of DNA metabolic process DNA biosynthetic process regulation of DNA metabolic process sequestering of triglyceride lipid storage lipid localization maintenance of location positive regulation of translation post-transcriptional regulation of gene expression translational initiation regulation of translational initiation by iron regulation of translational initiation positive regulation of translational initiation by iron translation regulation of translation positive regulation of translational initiation negative regulation of amyloid-beta clearance amyloid-beta clearance regulation of amyloid-beta clearance reactive oxygen species metabolic process regulation of reactive oxygen species metabolic process branching involved in salivary gland morphogenesis regulation of branching involved in salivary gland morphogenesis regulation of animal organ morphogenesis acute-phase response regulation of heat generation homeostatic process positive regulation of heat generation positive regulation of acute inflammatory response heat generation positive regulation of fever generation acute inflammatory response fever generation multicellular organismal-level homeostasis temperature homeostasis regulation of acute inflammatory response regulation of fever generation defense response to Gram-positive bacterium import into cell negative regulation of amino acid transport negative regulation of amine transport carboxylic acid transmembrane transport amino acid transmembrane transport L-amino acid transport L-glutamate import regulation of L-glutamate import across plasma membrane regulation of amino acid transport regulation of amino acid transmembrane transport negative regulation of L-glutamate import across plasma membrane L-glutamate import across plasma membrane organic acid transmembrane transport import across plasma membrane amino acid transport amine transport acidic amino acid transport regulation of amino acid import across plasma membrane dicarboxylic acid transport L-alpha-amino acid transmembrane transport amino acid import across plasma membrane regulation of amine transport L-glutamate transmembrane transport negative regulation of cell cycle negative regulation of mitotic cell cycle positive regulation of osteoclast differentiation positive regulation of hemopoiesis positive regulation of myeloid leukocyte differentiation positive regulation of myeloid cell differentiation positive regulation of leukocyte differentiation	membrane-bounded organelle intracellular anatomical structure endosome intracellular vesicle cellular anatomical entity intracellular membrane-bounded organelle recycling endosome endomembrane system intracellular organelle cytoplasmic vesicle organelle cytoplasm vesicle phagocytic cup membrane-bounded organelle intracellular anatomical structure endosome intracellular vesicle cellular anatomical entity intracellular membrane-bounded organelle recycling endosome endomembrane system intracellular organelle cytoplasmic vesicle organelle cytoplasm vesicle phagocytic cup cell periphery plasma membrane membrane extracellular region extracellular space cell surface membrane microdomain membrane raft external side of plasma membrane side of membrane secretory granule secretory vesicle somatodendritic compartment cell body neuronal cell body

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C	IPR008983	Tumour necrosis factor-like domain superfamily	Homologous Superfamily
A, B, C	IPR021184	Tumour necrosis factor, conserved site	Conserved Site
A, B, C	IPR006053	Tumour necrosis factor	Family
A, B, C	IPR002959	Tumour necrosis factor alpha	Family
A, B, C	IPR006052	Tumour necrosis factor domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.