2YAJ | pdb_00002yaj

CRYSTAL STRUCTURE OF GLYCYL RADICAL ENZYME with bound substrate

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	pdi_dom_like	e2yajD2	A: few secondary structure elements	X: HIPIP (high potential iron protein) (From Topology)	H: HIPIP (high potential iron protein) (From Topology)	T: HIPIP (high potential iron protein)	F: pdi_dom_like	ECOD (1.6)
D	EUF08672	e2yajD1	A: few secondary structure elements	X: HIPIP (high potential iron protein) (From Topology)	H: HIPIP (high potential iron protein) (From Topology)	T: HIPIP (high potential iron protein)	F: EUF08672	ECOD (1.6)
B	pdi_dom_like	e2yajB2	A: few secondary structure elements	X: HIPIP (high potential iron protein) (From Topology)	H: HIPIP (high potential iron protein) (From Topology)	T: HIPIP (high potential iron protein)	F: pdi_dom_like	ECOD (1.6)
B	EUF08672	e2yajB1	A: few secondary structure elements	X: HIPIP (high potential iron protein) (From Topology)	H: HIPIP (high potential iron protein) (From Topology)	T: HIPIP (high potential iron protein)	F: EUF08672	ECOD (1.6)
C	PFL-like	e2yajC1	A: a/b barrels	X: Ten stranded beta/alpha barrel (From Topology)	H: Ten stranded beta/alpha barrel (From Topology)	T: Ten stranded beta/alpha barrel	F: PFL-like	ECOD (1.6)
C	PFL-like	e2yajC2	A: extended segments	X: Glycyl radical domain (From Topology)	H: Glycyl radical domain (From Topology)	T: Glycyl radical domain	F: PFL-like	ECOD (1.6)
A	PFL-like	e2yajA1	A: a/b barrels	X: Ten stranded beta/alpha barrel (From Topology)	H: Ten stranded beta/alpha barrel (From Topology)	T: Ten stranded beta/alpha barrel	F: PFL-like	ECOD (1.6)
A	PFL-like	e2yajA2	A: extended segments	X: Glycyl radical domain (From Topology)	H: Glycyl radical domain (From Topology)	T: Glycyl radical domain	F: PFL-like	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	2.20.70.100	Mainly Beta	Single Sheet	Ubiquitin Ligase Nedd4	Chain: W	CATH (4.2.0)
B	2.20.70.100	Mainly Beta	Single Sheet	Ubiquitin Ligase Nedd4	Chain: W	CATH (4.2.0)
C	3.20.70.20	Alpha Beta	Alpha-Beta Barrel	Anaerobic Ribonucleotide-triphosphate Reductase Large Chain		CATH (4.2.0)
A	3.20.70.20	Alpha Beta	Alpha-Beta Barrel	Anaerobic Ribonucleotide-triphosphate Reductase Large Chain		CATH (4.2.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B, D	4-HYDROXYPHENYLACETATE DECARBOXYLASE SMALL SUBUNIT	4-hydroxyphenylacetate decarboxylase activity carboxy-lyase activity lyase activity catalytic activity carbon-carbon lyase activity iron-sulfur cluster binding binding 4 iron, 4 sulfur cluster binding metal cluster binding small molecule binding cation binding ion binding metal ion binding	-	-
A, C	4-HYDROXYPHENYLACETATE DECARBOXYLASE LARGE SUBUNIT	4-hydroxyphenylacetate decarboxylase activity carboxy-lyase activity lyase activity catalytic activity carbon-carbon lyase activity	-	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B, D	IPR041125	4-hydroxyphenylacetate decarboxylase small gamma subunit, N-terminal	Domain
B, D	IPR053727	HPA decarboxylase small subunit superfamily	Homologous Superfamily
B, D	IPR040923	4-hydroxyphenylacetate decarboxylase small gamma subunit, C-terminal	Domain
A, C	IPR051215	Glycyl Radical Enzyme	Family
A, C	IPR004184	Pyruvate formate lyase domain	Domain
A, C	IPR001150	Glycine radical domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.