3A4Z | pdb_00003a4z

Structure of cytochrome P450 Vdh mutant (Vdh-K1) obtained by directed evolution

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
E	d3a4ze_	All alpha proteins	Cytochrome P450	Cytochrome P450	automated matches	automated matches	(Pseudonocardia autotrophica ) [TaxId: 2074 ],	SCOPe (2.08)
D	d3a4zd_	All alpha proteins	Cytochrome P450	Cytochrome P450	automated matches	automated matches	(Pseudonocardia autotrophica ) [TaxId: 2074 ],	SCOPe (2.08)
C	d3a4zc_	All alpha proteins	Cytochrome P450	Cytochrome P450	automated matches	automated matches	(Pseudonocardia autotrophica ) [TaxId: 2074 ],	SCOPe (2.08)
B	d3a4zb_	All alpha proteins	Cytochrome P450	Cytochrome P450	automated matches	automated matches	(Pseudonocardia autotrophica ) [TaxId: 2074 ],	SCOPe (2.08)
A	d3a4za_	All alpha proteins	Cytochrome P450	Cytochrome P450	automated matches	automated matches	(Pseudonocardia autotrophica ) [TaxId: 2074 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
E	SCOP2B Superfamily	Cytochrome P450	8078715	3001061	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Cytochrome P450	8078715	3001061	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Cytochrome P450	8078715	3001061	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Cytochrome P450	8078715	3001061	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Cytochrome P450	8078715	3001061	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
E		e3a4zE1	A: Alpha-beta plaits	X: Phage tail protein-like	H: Transmembrane protein 14A	T: Cytochrome_CBB3	F:	ECOD (20:10:01)
D		e3a4zD1	A: Alpha-beta plaits	X: Phage tail protein-like	H: Transmembrane protein 14A	T: Cytochrome_CBB3	F:	ECOD (20:10:01)
C		e3a4zC1	A: Alpha-beta plaits	X: Phage tail protein-like	H: Transmembrane protein 14A	T: Cytochrome_CBB3	F:	ECOD (20:10:01)
B		e3a4zB1	A: Alpha-beta plaits	X: Phage tail protein-like	H: Transmembrane protein 14A	T: Cytochrome_CBB3	F:	ECOD (20:10:01)
A		e3a4zA1	A: Alpha-beta plaits	X: Phage tail protein-like	H: Transmembrane protein 14A	T: Cytochrome_CBB3	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
E	1.10.630.10	Mainly Alpha	Orthogonal Bundle	Cytochrome p450	Cytochrome P450	CATH (4.3.0)
D	1.10.630.10	Mainly Alpha	Orthogonal Bundle	Cytochrome p450	Cytochrome P450	CATH (4.3.0)
C	1.10.630.10	Mainly Alpha	Orthogonal Bundle	Cytochrome p450	Cytochrome P450	CATH (4.3.0)
B	1.10.630.10	Mainly Alpha	Orthogonal Bundle	Cytochrome p450	Cytochrome P450	CATH (4.3.0)
A	1.10.630.10	Mainly Alpha	Orthogonal Bundle	Cytochrome p450	Cytochrome P450	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E	Vitamin D hydroxylase	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced iron-sulfur protein as one donor, and incorporation of one atom of oxygen oxidoreductase activity monooxygenase activity cholestanetetraol 26-dehydrogenase activity oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen catalytic activity binding tetrapyrrole binding heme binding cation binding transition metal ion binding iron ion binding ion binding metal ion binding oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced iron-sulfur protein as one donor, and incorporation of one atom of oxygen oxidoreductase activity monooxygenase activity cholestanetetraol 26-dehydrogenase activity oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen catalytic activity binding tetrapyrrole binding heme binding cation binding transition metal ion binding iron ion binding ion binding metal ion binding small molecule binding	-	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E	IPR017972	Cytochrome P450, conserved site	Conserved Site
A, B, C, D, E	IPR001128	Cytochrome P450	Family
A, B, C, D, E	IPR002397	Cytochrome P450, B-class	Family
A, B, C, D, E	IPR036396	Cytochrome P450 superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.