3BN3 | pdb_00003bn3

crystal structure of ICAM-5 in complex with aL I domain

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d3bn3b1	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	automated matches	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d3bn3a_	Alpha and beta proteins (a/b)	vWA-like	vWA-like	Integrin A (or I) domain	Integrin CD11a/CD18 (Leukocyte function associated antigen-1, LFA-1)	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	vWA-like	8042676	3000832	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Nuc_deoxyrib_tr	e3bn3B3	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Subtilisin-like	T: Subtilisin-like	F: Nuc_deoxyrib_tr	ECOD (v294.1)
A		e3bn3A1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: SH3	T: Transmembrane protein 14A	F:	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
A	3.40.50.410	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	von Willebrand factor, type A domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B	PF03921	Intercellular adhesion molecule (ICAM), N-terminal domain (ICAM_N)	Intercellular adhesion molecule (ICAM), N-terminal domain	ICAMs normally functions to promote intercellular adhesion and signalling. However, The N-terminal domain of the receptor binds to the rhinovirus 'canyon' surrounding the icosahedral 5-fold axes, during the viral attachment process [1]. This family ...	ICAMs normally functions to promote intercellular adhesion and signalling. However, The N-terminal domain of the receptor binds to the rhinovirus 'canyon' surrounding the icosahedral 5-fold axes, during the viral attachment process [1]. This family is a family that is part of the Ig superfamily and is therefore related to the family ig (Pfam:PF00047).	Domain
A	PF00092	von Willebrand factor type A domain (VWA)	von Willebrand factor type A domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B	Intercellular adhesion molecule 5	cell adhesion molecule binding protein-containing complex binding protein binding binding integrin binding signaling receptor binding molecular function activator activity molecular function regulator activity signaling receptor regulator activity receptor ligand activity signaling receptor activator activity	cell adhesion cell-cell adhesion cell-cell adhesion mediated by integrin cell adhesion mediated by integrin cellular process neuron cell-cell adhesion localization import into cell transport phagocytosis endocytosis establishment of localization vesicle-mediated transport protein-containing complex organization cell adhesion cell-cell adhesion cell-cell adhesion mediated by integrin cell adhesion mediated by integrin cellular process neuron cell-cell adhesion localization import into cell transport phagocytosis endocytosis establishment of localization vesicle-mediated transport protein-containing complex organization protein homotetramerization cellular component organization cellular component biogenesis cellular component assembly protein complex oligomerization protein tetramerization protein-containing complex assembly protein homooligomerization cellular component organization or biogenesis homophilic cell-cell adhesion multicellular organismal process regulation of cellular component organization regulation of cellular process multicellular organism development cell junction assembly anatomical structure development regulation of synapse structure or activity regulation of synapse assembly synapse organization regulation of biological quality system development developmental process regulation of biological process biological regulation nervous system development regulation of cellular component biogenesis regulation of cell junction assembly regulation of synapse organization cell junction organization synapse assembly	synapse dendritic spine somatodendritic compartment neuron projection membrane cell periphery cellular anatomical structure cell junction dendrite membrane dendritic tree cell leading edge neuron spine plasma membrane membrane neuron projection synapse dendritic spine somatodendritic compartment neuron projection membrane cell periphery cellular anatomical structure cell junction dendrite membrane dendritic tree cell leading edge neuron spine plasma membrane membrane neuron projection leading edge membrane plasma membrane bounded cell projection dendritic spine membrane synaptic membrane cell projection postsynapse dendrite plasma membrane region cell projection membrane cell trailing edge uropod uropod membrane cell trailing edge membrane glutamatergic synapse
A	Integrin alpha-L	molecular transducer activity signaling receptor activity cell adhesion molecule binding protein binding binding ICAM-3 receptor activity transmembrane signaling receptor activity protein-containing complex binding cation binding ion binding metal ion binding small molecule binding	cell adhesion cell-matrix adhesion cell-substrate adhesion cellular process T cell extravasation lymphocyte migration memory T cell extravasation leukocyte migration immune system process mononuclear cell migration cellular extravasation cell migration cell motility T cell migration cell adhesion cell-matrix adhesion cell-substrate adhesion cellular process T cell extravasation lymphocyte migration memory T cell extravasation leukocyte migration immune system process mononuclear cell migration cellular extravasation cell migration cell motility T cell migration localization import into cell transport phagocytosis endocytosis establishment of localization vesicle-mediated transport cellular response to stimulus regulation of biological process integrin-mediated signaling pathway regulation of cellular process cell surface receptor signaling pathway response to stimulus signaling biological regulation cell communication signal transduction heterophilic cell-cell adhesion cell-cell adhesion leukocyte cell-cell adhesion defense response response to stress inflammatory response cellular localization receptor clustering macromolecule localization intracellular protein localization localization within membrane protein localization to membrane multicellular organismal process immune response cell activation lymphocyte activation cell activation involved in immune response leukocyte activation immune effector process T cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell T cell activation involved in immune response T cell activation leukocyte activation involved in immune response lymphocyte activation involved in immune response	membrane-bounded organelle intracellular anatomical structure membrane intracellular vesicle intracellular membrane-bounded organelle endomembrane system specific granule membrane intracellular organelle cytoplasmic vesicle membrane cellular anatomical structure bounding membrane of organelle vesicle membrane cytoplasmic vesicle organelle membrane-bounded organelle intracellular anatomical structure membrane intracellular vesicle intracellular membrane-bounded organelle endomembrane system specific granule membrane intracellular organelle cytoplasmic vesicle membrane cellular anatomical structure bounding membrane of organelle vesicle membrane cytoplasmic vesicle organelle secretory granule secretory vesicle cytoplasm vesicle organelle membrane secretory granule membrane specific granule extracellular exosome extracellular vesicle extracellular organelle extracellular region extracellular space extracellular membrane-bounded organelle cell surface protein-containing complex plasma membrane protein complex plasma membrane membrane protein complex receptor complex cell periphery integrin complex plasma membrane signaling receptor complex protein complex involved in cell adhesion integrin alphaL-beta2 complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B	IPR047012	Intercellular adhesion molecule/vascular cell adhesion molecule	Family
B	IPR036179	Immunoglobulin-like domain superfamily	Homologous Superfamily
B	IPR003598	Immunoglobulin subtype 2	Domain
B	IPR003988	Intercellular adhesion molecule	Domain
B	IPR048679	Intercellular adhesion molecule 1/3/5, D2 domain	Domain
B	IPR003987	Intercellular adhesion molecule/vascular cell adhesion molecule, N-terminal	Domain
B	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
B	IPR003599	Immunoglobulin domain subtype	Domain
B	IPR007110	Immunoglobulin-like domain	Domain
B	IPR013768	Intercellular adhesion molecule, N-terminal	Domain
A	IPR013517	FG-GAP repeat	Repeat
A	IPR013519	Integrin alpha beta-propellor	Repeat
A	IPR000413	Integrin alpha chain	Family
A	IPR036465	von Willebrand factor A-like domain superfamily	Homologous Superfamily
A	IPR013649	Integrin alpha, first immunoglubulin-like domain	Domain
A	IPR028994	Integrin alpha, N-terminal	Homologous Superfamily
A	IPR002035	von Willebrand factor, type A	Domain
A	IPR048285	Integrin alpha, second immunoglobulin-like domain	Domain
A	IPR032695	Integrin domain superfamily	Homologous Superfamily
A	IPR018184	Integrin alpha chain, C-terminal cytoplasmic region, conserved site	Conserved Site

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
B	Pharos: Q9UMF0	breast carcinoma colorectal cancer myositis primary biliary cholangitis systemic lupus erythematosus astrocytic tumor Colorectal Neoplasms Hashimoto thyroiditis juvenile idiopathic arthritis malignant glioma oligodendroglioma primitive neuroectodermal tumor systemic sclerosis atypical teratoid rhabdoid tumor Crohn disease breast carcinoma colorectal cancer myositis primary biliary cholangitis systemic lupus erythematosus astrocytic tumor Colorectal Neoplasms Hashimoto thyroiditis juvenile idiopathic arthritis malignant glioma oligodendroglioma primitive neuroectodermal tumor systemic sclerosis atypical teratoid rhabdoid tumor Crohn disease hypothyroidism large cell medulloblastoma medulloblastoma pilocytic astrocytoma psoriasis ulcerative colitis breast cancer colorectal carcinoma glioblastoma inflammatory bowel disease malignant ependymoma
A	Pharos: P20701	ulcerative colitis acute promyelocytic leukemia Liver Cirrhosis, Experimental Behcet disease inflammatory bowel disease Sjogren syndrome chronic obstructive pulmonary disease dry eye syndrome interstitial cystitis lung carcinoma osteosarcoma spina bifida atopic eczema glioblastoma malignant glioma ulcerative colitis acute promyelocytic leukemia Liver Cirrhosis, Experimental Behcet disease inflammatory bowel disease Sjogren syndrome chronic obstructive pulmonary disease dry eye syndrome interstitial cystitis lung carcinoma osteosarcoma spina bifida atopic eczema glioblastoma malignant glioma periodontitis psoriasis tuberculosis cutaneous lupus erythematosus lung cancer non-small cell lung carcinoma pilocytic astrocytoma