3BT2
Structure of urokinase receptor, urokinase and vitronectin complex
External Resource: Annotation
- Domain Annotation: SCOP/SCOPe Classification
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Domain Annotation: CATH
- IMGT Antibody Annotation
- SAbDab Antibody Annotation
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Pharos: Disease Associations
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Kringle-like | 8042599 | 3000761 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | EGF/Laminin-like | 8042597 | 3000412 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Somatomedin B domain | 8033943 | 3001699 | SCOP2B (2022-06-29) |
E [auth U] | SCOP2B Superfamily | Snake toxin-like | 8032874 | 3000545 | SCOP2B (2022-06-29) |
E [auth U] | SCOP2B Superfamily | Snake toxin-like | 8032873 | 3000545 | SCOP2B (2022-06-29) |
E [auth U] | SCOP2B Superfamily | Snake toxin-like | 8032872 | 3000545 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Kringle | e3bt2A1 | A: few secondary structure elements | X: Kringle-like (From Topology) | H: Kringle-like (From Topology) | T: Kringle-like | F: Kringle | ECOD (1.6) |
A | EGF | e3bt2A2 | A: few secondary structure elements | X: EGF-like | H: EGF-related | T: EGF/Laminin | F: EGF | ECOD (1.6) |
B | Somatomedin_B | e3bt2B1 | A: few secondary structure elements | X: Somatomedin B domain (From Topology) | H: Somatomedin B domain (From Topology) | T: Somatomedin B domain | F: Somatomedin_B | ECOD (1.6) |
C [auth L] | C1-set_4 | e3bt2L2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_4 | ECOD (1.6) |
D [auth H] | V-set_8 | e3bt2H1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
D [auth H] | C1-set_1 | e3bt2H2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_1 | ECOD (1.6) |
E [auth U] | UPAR_LY6 | e3bt2U1 | A: few secondary structure elements | X: Snake toxin-like (From Topology) | H: Snake toxin-like (From Topology) | T: Snake toxin-like | F: UPAR_LY6 | ECOD (1.6) |
E [auth U] | UPAR_LY6_1 | e3bt2U2 | A: few secondary structure elements | X: Snake toxin-like (From Topology) | H: Snake toxin-like (From Topology) | T: Snake toxin-like | F: UPAR_LY6_1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.10.25.10 | Mainly Beta | Ribbon | Laminin | Laminin | CATH (4.3.0) |
A | 2.40.20.10 | Mainly Beta | Beta Barrel | Plasminogen Kringle 4 | Plasminogen Kringle 4 | CATH (4.3.0) |
C [auth L] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
D [auth H] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
E [auth U] | 2.10.60.10 | Mainly Beta | Ribbon | CD59 | CD59 | CATH (4.3.0) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
C [auth L] | Anti-UPAR Antibody Fab | L-KAPPA | Mus musculus (house mouse) | IGKV4-86*01, IGKJ1*01, IGKJ1*02, IGKJ2*01, IGKC*01, IGKC*02 | V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA | IG | FAB-GAMMA-1_KAPPA | IMGT (202445-0) |
D [auth H] | Anti-UPAR Antibody Fab | VH-CH1 | Mus musculus (house mouse) | IGHV1-66*01, IGHJ1*01, IGHJ1*02, IGHJ1*03, IGHG1*02 | V-DOMAIN VH, C-DOMAIN CH1 | IG | FAB-GAMMA-1_KAPPA | IMGT (202445-0) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
C [auth L] | Light Chain | IGKV4 | Kappa | urokinase plasminogen activator surface receptor | SAbDab (2024-11-15) |
D [auth H] | Heavy Chain | IGHV1 | - | urokinase plasminogen activator surface receptor | SAbDab (2024-11-15) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00051 | Kringle domain (Kringle) | Kringle domain | Kringle domains have been found in plasminogen, hepatocyte growth factors, prothrombin, and apolipoprotein A. Structure is disulfide-rich, nearly all-beta. | Domain | |
PF01033 | Somatomedin B domain (Somatomedin_B) | Somatomedin B domain | - | Family | |
E [auth U] | PF00021 | u-PAR/Ly-6 domain (UPAR_LY6) | u-PAR/Ly-6 domain | This extracellular disulphide bond rich domain is related to Pfam:PF00087. | Domain |