3CUE | pdb_00003cue

Crystal structure of a TRAPP subassembly activating the Rab Ypt1p

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
X	d3cuex1	Alpha and beta proteins (a/b)	P-loop containing nucleoside triphosphate hydrolases	P-loop containing nucleoside triphosphate hydrolases	G proteins	Rab11a	Baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ],	SCOPe (2.08)
R	d3cuer1	Alpha and beta proteins (a/b)	P-loop containing nucleoside triphosphate hydrolases	P-loop containing nucleoside triphosphate hydrolases	G proteins	Rab11a	Baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ],	SCOPe (2.08)
L	d3cuel1	Alpha and beta proteins (a/b)	P-loop containing nucleoside triphosphate hydrolases	P-loop containing nucleoside triphosphate hydrolases	G proteins	Rab11a	Baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ],	SCOPe (2.08)
F	d3cuef1	Alpha and beta proteins (a/b)	P-loop containing nucleoside triphosphate hydrolases	P-loop containing nucleoside triphosphate hydrolases	G proteins	Rab11a	Baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
X	SCOP2B Superfamily	Ras-like P-loop GTPases	8057264	3002022	SCOP2B (2022-06-29)
R	SCOP2B Superfamily	Ras-like P-loop GTPases	8057264	3002022	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Ras-like P-loop GTPases	8057264	3002022	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Ras-like P-loop GTPases	8057264	3002022	SCOP2B (2022-06-29)
W	SCOP2B Superfamily	Ligand-binding domain in the NO signalling and Golgi transport	8065542	3001668	SCOP2B (2022-06-29)
V	SCOP2B Superfamily	Ligand-binding domain in the NO signalling and Golgi transport	8065542	3001668	SCOP2B (2022-06-29)
Q	SCOP2B Superfamily	Ligand-binding domain in the NO signalling and Golgi transport	8065542	3001668	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	Ligand-binding domain in the NO signalling and Golgi transport	8065542	3001668	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Ligand-binding domain in the NO signalling and Golgi transport	8065542	3001668	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Ligand-binding domain in the NO signalling and Golgi transport	8065542	3001668	SCOP2B (2022-06-29)
E	SCOP2 Family	TRAPP components	8065541	4003802	SCOP2 (2022-06-29)
E	SCOP2 Superfamily	Ligand-binding domain in the NO signalling and Golgi transport	8065542	3001668	SCOP2 (2022-06-29)
D	SCOP2B Superfamily	Ligand-binding domain in the NO signalling and Golgi transport	8065542	3001668	SCOP2B (2022-06-29)
U	SCOP2 Family	Sybindin-like	8045358	4004434	SCOP2 (2022-06-29)
U	SCOP2 Superfamily	SNARE-like	8090321	3001113	SCOP2 (2022-06-29)
O	SCOP2B Superfamily	SNARE-like	8090321	3001113	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	SNARE-like	8090321	3001113	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	SNARE-like	8090321	3001113	SCOP2B (2022-06-29)
A	SCOP2 Family	Sybindin-like	8045357	4004434	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	SNARE-like	8090320	3001113	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
X	GBP	e3cueX1	A: alpha bundles	X: HTH	H: HTH	T: winged helix domain	F: GBP	ECOD (develop294)
R	GBP	e3cueR1	A: alpha bundles	X: HTH	H: HTH	T: winged helix domain	F: GBP	ECOD (develop294)
L	GBP	e3cueL1	A: alpha bundles	X: HTH	H: HTH	T: winged helix domain	F: GBP	ECOD (develop294)
F	GBP	e3cueF1	A: alpha bundles	X: HTH	H: HTH	T: winged helix domain	F: GBP	ECOD (develop294)
W	RasGEF	e3cueW1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: RasGEF	ECOD (develop294)
V	RasGEF	e3cueV1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: RasGEF	ECOD (develop294)
Q	RasGEF	e3cueQ1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: RasGEF	ECOD (develop294)
P	RasGEF	e3cueP1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: RasGEF	ECOD (develop294)
K	RasGEF	e3cueK1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: RasGEF	ECOD (develop294)
J	RasGEF	e3cueJ1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: RasGEF	ECOD (develop294)
E	RasGEF	e3cueE1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: RasGEF	ECOD (develop294)
D	RVP	e3cueD1	A: alpha bundles	X: Profilin-like	H: sensor domains	T: sensor domains	F: RVP	ECOD (develop294)
U	RasGEF	e3cueU1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: RasGEF	ECOD (develop294)
O	RasGEF	e3cueO1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: RasGEF	ECOD (develop294)
I	RasGEF	e3cueI1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: RasGEF	ECOD (develop294)
C	RVP	e3cueC1	A: alpha bundles	X: Profilin-like	H: sensor domains	T: sensor domains	F: RVP	ECOD (develop294)
T	RasGEF	e3cueT1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: RasGEF	ECOD (develop294)
N	RasGEF	e3cueN1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: RasGEF	ECOD (develop294)
H	RasGEF	e3cueH1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: RasGEF	ECOD (develop294)
B	RVP	e3cueB1	A: alpha bundles	X: Profilin-like	H: sensor domains	T: sensor domains	F: RVP	ECOD (develop294)
S	Ig_3	e3cueS1	A: alpha bundles	X: Type II ABC importer transmembrane domain fold	H: DNA mismatch repair protein MutL regulatory subdomain	T: DNA mismatch repair protein MutL regulatory subdomain	F: Ig_3	ECOD (develop294)
M	Ig_3	e3cueM1	A: alpha bundles	X: Type II ABC importer transmembrane domain fold	H: DNA mismatch repair protein MutL regulatory subdomain	T: DNA mismatch repair protein MutL regulatory subdomain	F: Ig_3	ECOD (develop294)
G	Ig_3	e3cueG1	A: alpha bundles	X: Type II ABC importer transmembrane domain fold	H: DNA mismatch repair protein MutL regulatory subdomain	T: DNA mismatch repair protein MutL regulatory subdomain	F: Ig_3	ECOD (develop294)
A	Ig_3	e3cueA1	A: alpha bundles	X: Type II ABC importer transmembrane domain fold	H: DNA mismatch repair protein MutL regulatory subdomain	T: DNA mismatch repair protein MutL regulatory subdomain	F: Ig_3	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
X	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (4.3.0)
R	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (4.3.0)
L	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (4.3.0)
F	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (4.3.0)
W	3.30.1380.20	Alpha Beta	2-Layer Sandwich	Muramoyl-pentapeptide Carboxypeptidase	domain 2	CATH (4.3.0)
V	3.30.1380.20	Alpha Beta	2-Layer Sandwich	Muramoyl-pentapeptide Carboxypeptidase	domain 2	CATH (4.3.0)
Q	3.30.1380.20	Alpha Beta	2-Layer Sandwich	Muramoyl-pentapeptide Carboxypeptidase	domain 2	CATH (4.3.0)
P	3.30.1380.20	Alpha Beta	2-Layer Sandwich	Muramoyl-pentapeptide Carboxypeptidase	domain 2	CATH (4.3.0)
K	3.30.1380.20	Alpha Beta	2-Layer Sandwich	Muramoyl-pentapeptide Carboxypeptidase	domain 2	CATH (4.3.0)
J	3.30.1380.20	Alpha Beta	2-Layer Sandwich	Muramoyl-pentapeptide Carboxypeptidase	domain 2	CATH (4.3.0)
E	3.30.1380.20	Alpha Beta	2-Layer Sandwich	Muramoyl-pentapeptide Carboxypeptidase	domain 2	CATH (4.3.0)
D	3.30.1380.20	Alpha Beta	2-Layer Sandwich	Muramoyl-pentapeptide Carboxypeptidase	domain 2	CATH (4.3.0)
U	3.30.450.70	Alpha Beta	2-Layer Sandwich	Beta-Lactamase		CATH (4.3.0)
O	3.30.450.70	Alpha Beta	2-Layer Sandwich	Beta-Lactamase		CATH (4.3.0)
I	3.30.450.70	Alpha Beta	2-Layer Sandwich	Beta-Lactamase		CATH (4.3.0)
C	3.30.450.70	Alpha Beta	2-Layer Sandwich	Beta-Lactamase		CATH (4.3.0)
T	3.30.1380.20	Alpha Beta	2-Layer Sandwich	Muramoyl-pentapeptide Carboxypeptidase	domain 2	CATH (4.3.0)
N	3.30.1380.20	Alpha Beta	2-Layer Sandwich	Muramoyl-pentapeptide Carboxypeptidase	domain 2	CATH (4.3.0)
H	3.30.1380.20	Alpha Beta	2-Layer Sandwich	Muramoyl-pentapeptide Carboxypeptidase	domain 2	CATH (4.3.0)
B	3.30.1380.20	Alpha Beta	2-Layer Sandwich	Muramoyl-pentapeptide Carboxypeptidase	domain 2	CATH (4.3.0)
S	3.30.450.70	Alpha Beta	2-Layer Sandwich	Beta-Lactamase		CATH (4.3.0)
M	3.30.450.70	Alpha Beta	2-Layer Sandwich	Beta-Lactamase		CATH (4.3.0)
G	3.30.450.70	Alpha Beta	2-Layer Sandwich	Beta-Lactamase		CATH (4.3.0)
A	3.30.450.70	Alpha Beta	2-Layer Sandwich	Beta-Lactamase		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
F, L, R, X	PF00071	Ras family (Ras)	Ras family	Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See Pfam:PF00009 Pfam:PF00025, Pfam:PF00063. As regards Rab GTPases, these are important regulators of vesicle formation, motili ...	Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See Pfam:PF00009 Pfam:PF00025, Pfam:PF00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices [1].	Domain
D, E, J, K, P D, E, J, K, P, Q, V, W	PF04051	Transport protein particle (TRAPP) component (TRAPP)	Transport protein particle (TRAPP) component	-	Family
C, I, O, U	PF04099	Sybindin-like family (Sybindin)	Sybindin-like family	-	Family
B, H, N, T	PF04051	Transport protein particle (TRAPP) component (TRAPP)	Transport protein particle (TRAPP) component	-	Family
A, G, M, S	PF04099	Sybindin-like family (Sybindin)	Sybindin-like family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
F, L, R, X	GTP-binding protein YPT1	binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding protein binding SNARE binding pyrophosphatase activity GTPase activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity	catabolic process RNA metabolic process primary metabolic process nucleic acid metabolic process macromolecule catabolic process nucleobase-containing compound catabolic process nucleobase-containing compound metabolic process pre-mRNA catabolic process nucleic acid catabolic process metabolic process cellular process macromolecule metabolic process RNA catabolic process membrane organization catabolic process RNA metabolic process primary metabolic process nucleic acid metabolic process macromolecule catabolic process nucleobase-containing compound catabolic process nucleobase-containing compound metabolic process pre-mRNA catabolic process nucleic acid catabolic process metabolic process cellular process macromolecule metabolic process RNA catabolic process membrane organization vesicle budding from membrane cellular localization transport intracellular transport endoplasmic reticulum to Golgi vesicle-mediated transport establishment of localization vesicle-mediated transport cellular component organization vesicle organization localization organelle organization establishment of localization in cell cellular component organization or biogenesis COPII-coated vesicle budding Golgi vesicle transport early endosome to Golgi transport endosomal transport cytosolic transport retrograde transport, endosome to Golgi cellular response to stimulus regulation of cellular process response to stimulus signaling regulation of cellular response to stress regulation of response to endoplasmic reticulum stress endoplasmic reticulum unfolded protein response regulation of signal transduction intracellular signal transduction cell communication regulation of endoplasmic reticulum unfolded protein response cellular response to stress regulation of intracellular signal transduction regulation of response to stress response to stress signal transduction response to endoplasmic reticulum stress regulation of biological process regulation of signaling cellular response to topologically incorrect protein biological regulation cellular response to unfolded protein response to unfolded protein regulation of response to stimulus response to topologically incorrect protein regulation of cell communication Golgi vesicle budding protein-containing complex organization membrane fusion organelle membrane fusion cellular component biogenesis organelle fusion cellular component assembly protein-containing complex assembly SNARE complex assembly vesicle fusion autophagosome assembly organelle assembly vacuole organization macroautophagy autophagy autophagosome organization process utilizing autophagic mechanism membrane docking organelle localization by membrane tethering Golgi vesicle docking organelle localization vesicle docking establishment of protein localization protein transport macromolecule localization intracellular protein localization intracellular protein transport retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum protein targeting establishment of protein localization to vacuole protein localization to vacuole cytoplasm to vacuole targeting by the Cvt pathway establishment of protein localization to organelle protein localization to organelle vacuolar transport protein targeting to vacuole cellular component disassembly SNARE complex disassembly protein-containing complex disassembly localization within membrane endocytic recycling vesicle-mediated transport to the plasma membrane protein localization to phagophore assembly site reticulophagy	cellular anatomical structure endomembrane system membrane-bounded organelle intracellular organelle intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle Golgi apparatus cis-Golgi network Golgi apparatus subcompartment organelle subcompartment Golgi stack cellular anatomical structure endomembrane system membrane-bounded organelle intracellular organelle intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle Golgi apparatus cis-Golgi network Golgi apparatus subcompartment organelle subcompartment Golgi stack cytosol phagophore assembly site membrane membrane phagophore assembly site endoplasmic reticulum subcompartment nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum organelle membrane endoplasmic reticulum membrane cytoplasmic vesicle intracellular vesicle vesicle Golgi membrane bounding membrane of organelle
D, E, J, K, P D, E, J, K, P, Q, V, W	Transport protein particle 22 kDa subunit	-	localization transport cellular process establishment of localization Golgi vesicle transport vesicle-mediated transport intra-Golgi vesicle-mediated transport catabolic process macroautophagy autophagy metabolic process process utilizing autophagic mechanism cellular response to stimulus response to nutrient levels localization transport cellular process establishment of localization Golgi vesicle transport vesicle-mediated transport intra-Golgi vesicle-mediated transport catabolic process macroautophagy autophagy metabolic process process utilizing autophagic mechanism cellular response to stimulus response to nutrient levels cellular response to nitrogen levels response to stimulus cellular response to starvation cellular response to nutrient levels cellular response to stress cellular response to nitrogen starvation response to stress response to starvation cellular localization intracellular transport endosomal transport cytosolic transport retrograde transport, endosome to Golgi establishment of localization in cell establishment of protein localization protein targeting establishment of protein localization to vacuole protein localization to vacuole cytoplasm to vacuole targeting by the Cvt pathway establishment of protein localization to organelle protein transport protein localization to organelle macromolecule localization vacuolar transport intracellular protein localization protein targeting to vacuole intracellular protein transport endoplasmic reticulum to Golgi vesicle-mediated transport	membrane-bounded organelle intracellular anatomical structure cis-Golgi network membrane Golgi apparatus membrane intracellular membrane-bounded organelle endomembrane system intracellular organelle cellular anatomical structure bounding membrane of organelle cis-Golgi network organelle cytoplasm organelle membrane membrane-bounded organelle intracellular anatomical structure cis-Golgi network membrane Golgi apparatus membrane intracellular membrane-bounded organelle endomembrane system intracellular organelle cellular anatomical structure bounding membrane of organelle cis-Golgi network organelle cytoplasm organelle membrane protein-containing complex intracellular protein-containing complex TRAPP complex vesicle tethering complex endosome intracellular vesicle TRAPPII protein complex cytoplasmic vesicle vesicle TRAPPIII protein complex cytosol TRAPPI protein complex endoplasmic reticulum-Golgi intermediate compartment endoplasmic reticulum phagophore assembly site
C, I, O, U	Transport protein particle 18 kDa subunit	-	localization transport cellular process establishment of localization Golgi vesicle transport vesicle-mediated transport intra-Golgi vesicle-mediated transport catabolic process macroautophagy autophagy metabolic process process utilizing autophagic mechanism cellular localization intracellular transport localization transport cellular process establishment of localization Golgi vesicle transport vesicle-mediated transport intra-Golgi vesicle-mediated transport catabolic process macroautophagy autophagy metabolic process process utilizing autophagic mechanism cellular localization intracellular transport endosomal transport cytosolic transport retrograde transport, endosome to Golgi establishment of localization in cell endoplasmic reticulum to Golgi vesicle-mediated transport	protein-containing complex intracellular protein-containing complex TRAPP complex vesicle tethering complex membrane-bounded organelle intracellular anatomical structure Golgi apparatus endosome intracellular vesicle intracellular membrane-bounded organelle endomembrane system intracellular organelle cellular anatomical structure TRAPPII protein complex protein-containing complex intracellular protein-containing complex TRAPP complex vesicle tethering complex membrane-bounded organelle intracellular anatomical structure Golgi apparatus endosome intracellular vesicle intracellular membrane-bounded organelle endomembrane system intracellular organelle cellular anatomical structure TRAPPII protein complex cytoplasmic vesicle organelle cytoplasm vesicle TRAPPIII protein complex cytosol TRAPPI protein complex endoplasmic reticulum-Golgi intermediate compartment endoplasmic reticulum phagophore assembly site
B, H, N, T	Transport protein particle 31 kDa subunit	-	localization transport cellular process establishment of localization Golgi vesicle transport vesicle-mediated transport intra-Golgi vesicle-mediated transport catabolic process macroautophagy autophagy metabolic process process utilizing autophagic mechanism cellular localization intracellular transport localization transport cellular process establishment of localization Golgi vesicle transport vesicle-mediated transport intra-Golgi vesicle-mediated transport catabolic process macroautophagy autophagy metabolic process process utilizing autophagic mechanism cellular localization intracellular transport endosomal transport cytosolic transport retrograde transport, endosome to Golgi establishment of localization in cell endoplasmic reticulum to Golgi vesicle-mediated transport	membrane-bounded organelle protein-containing complex intracellular anatomical structure Golgi apparatus endosome intracellular vesicle intracellular membrane-bounded organelle endomembrane system TRAPP complex vesicle tethering complex intracellular organelle cellular anatomical structure TRAPPII protein complex cytoplasmic vesicle membrane-bounded organelle protein-containing complex intracellular anatomical structure Golgi apparatus endosome intracellular vesicle intracellular membrane-bounded organelle endomembrane system TRAPP complex vesicle tethering complex intracellular organelle cellular anatomical structure TRAPPII protein complex cytoplasmic vesicle organelle cytoplasm vesicle intracellular protein-containing complex TRAPPIII protein complex cytosol TRAPPI protein complex endoplasmic reticulum-Golgi intermediate compartment endoplasmic reticulum phagophore assembly site
A, G, M, S	Transport protein particle 23 kDa subunit	-	localization transport cellular process establishment of localization Golgi vesicle transport vesicle-mediated transport intra-Golgi vesicle-mediated transport catabolic process macroautophagy autophagy metabolic process process utilizing autophagic mechanism cellular localization intracellular transport localization transport cellular process establishment of localization Golgi vesicle transport vesicle-mediated transport intra-Golgi vesicle-mediated transport catabolic process macroautophagy autophagy metabolic process process utilizing autophagic mechanism cellular localization intracellular transport endosomal transport cytosolic transport retrograde transport, endosome to Golgi establishment of localization in cell cellular component organization organelle organization chromosome organization cellular component organization or biogenesis endoplasmic reticulum to Golgi vesicle-mediated transport	protein-containing complex intracellular protein-containing complex TRAPP complex vesicle tethering complex membrane-bounded organelle intracellular anatomical structure Golgi apparatus endosome intracellular vesicle intracellular membrane-bounded organelle endomembrane system intracellular organelle cellular anatomical structure TRAPPII protein complex protein-containing complex intracellular protein-containing complex TRAPP complex vesicle tethering complex membrane-bounded organelle intracellular anatomical structure Golgi apparatus endosome intracellular vesicle intracellular membrane-bounded organelle endomembrane system intracellular organelle cellular anatomical structure TRAPPII protein complex cytoplasmic vesicle organelle cytoplasm vesicle TRAPPIII protein complex cytosol TRAPPI protein complex endoplasmic reticulum-Golgi intermediate compartment endoplasmic reticulum phagophore assembly site

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
F, L, R, X	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
F, L, R, X	IPR005225	Small GTP-binding domain	Domain
F, L, R, X	IPR001806	Small GTPase	Family
F, L, R, X	IPR050227	Ras-related protein Rab	Family
F, L, R, X	IPR057289	Rab1/Ypt1	Family
D, E, J, K, P D, E, J, K, P, Q, V, W	IPR024096	NO signalling/Golgi transport ligand-binding domain superfamily	Homologous Superfamily
D, E, J, K, P D, E, J, K, P, Q, V, W	IPR007194	Transport protein particle (TRAPP) component	Family
D, E, J, K, P D, E, J, K, P, Q, V, W	IPR016721	Bet3 family	Family
C, I, O, U	IPR007233	Trafficking protein particle complex subunit	Family
C, I, O, U	IPR011012	Longin-like domain superfamily	Homologous Superfamily
B, H, N, T	IPR024096	NO signalling/Golgi transport ligand-binding domain superfamily	Homologous Superfamily
B, H, N, T	IPR016696	TRAPP I complex, subunit 5	Family
B, H, N, T	IPR007194	Transport protein particle (TRAPP) component	Family
A, G, M, S	IPR007233	Trafficking protein particle complex subunit	Family
A, G, M, S	IPR011012	Longin-like domain superfamily	Homologous Superfamily