3D3I
Crystal structural of Escherichia coli K12 YgjK, a glucosidase belonging to glycoside hydrolase family 63
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PRK10137 | e3d3iA1 | A: beta sandwiches | X: Glycosyl hydrolase domain-like | H: supersandwich (From Topology) | T: supersandwich | F: PRK10137 | ECOD (1.6) |
A | Glyco_hydro_63 | e3d3iA2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: alpha/alpha toroid (From Topology) | T: alpha/alpha toroid | F: Glyco_hydro_63 | ECOD (1.6) |
B | PRK10137 | e3d3iB1 | A: beta sandwiches | X: Glycosyl hydrolase domain-like | H: supersandwich (From Topology) | T: supersandwich | F: PRK10137 | ECOD (1.6) |
B | Glyco_hydro_63 | e3d3iB2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: alpha/alpha toroid (From Topology) | T: alpha/alpha toroid | F: Glyco_hydro_63 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.70.98.50 | Mainly Beta | Distorted Sandwich | Beta-galactosidase | Chain A, domain 5 | CATH (4.3.0) |
A | 1.10.287.100 | Mainly Alpha | Orthogonal Bundle | Helix Hairpins | CATH (4.3.0) | |
A | 1.50.10.10 | Mainly Alpha | Alpha/alpha barrel | Glycosyltransferase | CATH (4.3.0) | |
A | 3.30.1390.40 | Alpha Beta | 2-Layer Sandwich | Ribosomal Protein L30 | Chain: A, | CATH (4.3.0) |
B | 2.70.98.50 | Mainly Beta | Distorted Sandwich | Beta-galactosidase | Chain A, domain 5 | CATH (4.3.0) |
B | 1.10.287.100 | Mainly Alpha | Orthogonal Bundle | Helix Hairpins | CATH (4.3.0) | |
B | 1.50.10.10 | Mainly Alpha | Alpha/alpha barrel | Glycosyltransferase | CATH (4.3.0) | |
B | 3.30.1390.40 | Alpha Beta | 2-Layer Sandwich | Ribosomal Protein L30 | Chain: A, | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF22422 | Mannosylglycerate hydrolase MGH1-like glycoside hydrolase domain (MGH1-like_GH) | Mannosylglycerate hydrolase MGH1-like glycoside hydrolase domain | This entry represents the glycoside hydrolase domain found at the C-terminal of Mannosylglycerate hydrolase MGH1 and similar sequences. | Domain | |
PF21152 | Glucosidase YgjK, N-terminal (YgjK_N) | Glucosidase YgjK, N-terminal | This domain is found at the N-terminal end of Glucosidase YgjK from Escherichia coli and similar bacterial enzymes from the glycoside hydrolase family 63 (GH63) from bacteria, archaea, and eukaryotes. YgjK is organised into N- and A- domains and a li ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR012341 | Six-hairpin glycosidase-like superfamily | Homologous Superfamily | |
IPR048450 | Glucosidase YgjK, N-terminal domain | Domain | |
IPR001661 | Glycoside hydrolase, family 37 | Family | |
IPR008928 | Six-hairpin glycosidase superfamily | Homologous Superfamily |