3D9T

CIAP1-BIR3 in complex with N-terminal peptide from Caspase-9 (ATPFQE)

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d3d9ta1	Small proteins	Inhibitor of apoptosis (IAP) repeat	Inhibitor of apoptosis (IAP) repeat	Inhibitor of apoptosis (IAP) repeat	2MIHB/C-IAP-1	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d3d9tb1	Small proteins	Inhibitor of apoptosis (IAP) repeat	Inhibitor of apoptosis (IAP) repeat	Inhibitor of apoptosis (IAP) repeat	2MIHB/C-IAP-1	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d3d9tb2	Artifacts	Tags	Tags	Tags	N-terminal Tags	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Inhibitor of apoptosis (IAP) repeat	8028197	4003796	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Inhibitor of apoptosis (IAP) repeat	8040576	3001510	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	Inhibitor of apoptosis (IAP) repeat	8040576	3001510	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	BIR	e3d9tA1	A: few secondary structure elements	X: Inhibitor of apoptosis (IAP) repeat (From Topology)	H: Inhibitor of apoptosis (IAP) repeat (From Topology)	T: Inhibitor of apoptosis (IAP) repeat	F: BIR	ECOD (1.6)
B	BIR	e3d9tB1	A: few secondary structure elements	X: Inhibitor of apoptosis (IAP) repeat (From Topology)	H: Inhibitor of apoptosis (IAP) repeat (From Topology)	T: Inhibitor of apoptosis (IAP) repeat	F: BIR	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.10.1170.10	Mainly Alpha	Orthogonal Bundle	Inhibitor Of Apoptosis Protein (2mihbC-IAP-1)	Chain A	CATH (4.3.0)
B	1.10.1170.10	Mainly Alpha	Orthogonal Bundle	Inhibitor Of Apoptosis Protein (2mihbC-IAP-1)	Chain A	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF00653	Inhibitor of Apoptosis domain (BIR)	Inhibitor of Apoptosis domain	BIR stands for 'Baculovirus Inhibitor of apoptosis protein Repeat'. It is found repeated in inhibitor of apoptosis proteins (IAPs), and in fact it is also known as IAP repeat. These domains characteristically have a number of invariant residues, incl ...	BIR stands for 'Baculovirus Inhibitor of apoptosis protein Repeat'. It is found repeated in inhibitor of apoptosis proteins (IAPs), and in fact it is also known as IAP repeat. These domains characteristically have a number of invariant residues, including 3 conserved cysteines and one conserved histidine that coordinate a zinc ion. They are usually made up of 4-5 alpha helices and a three-stranded beta-sheet. BIR is also found in other proteins known as BIR-domain-containing proteins (BIRPs), such as Survivin (Swiss:O15392) [2].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Baculoviral IAP repeat-containing protein 2	aminoacyltransferase activity ubiquitin-like protein transferase activity catalytic activity, acting on a protein acyltransferase activity ubiquitin-like protein ligase activity ubiquitin protein ligase activity transferase activity catalytic activity ubiquitin-protein transferase activity protein binding binding protein-folding chaperone binding protein-containing complex binding identical protein binding aminoacyltransferase activity ubiquitin-like protein transferase activity catalytic activity, acting on a protein acyltransferase activity ubiquitin-like protein ligase activity ubiquitin protein ligase activity transferase activity catalytic activity ubiquitin-protein transferase activity protein binding binding protein-folding chaperone binding protein-containing complex binding identical protein binding transcription coactivator activity transcription regulator activity transcription coregulator activity protein-macromolecule adaptor activity molecular adaptor activity ubiquitin binding ubiquitin-like protein binding enzyme regulator activity cysteine-type endopeptidase inhibitor activity involved in apoptotic process molecular function regulator activity cysteine-type endopeptidase regulator activity involved in apoptotic process FBXO family protein binding cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding	developmental process placenta development animal organ development anatomical structure development cellular response to stimulus positive regulation of response to biotic stimulus regulation of cellular process pattern recognition receptor signaling pathway response to stimulus regulation of signal transduction response to biotic stimulus intracellular signal transduction cell communication immune response-activating signaling pathway developmental process placenta development animal organ development anatomical structure development cellular response to stimulus positive regulation of response to biotic stimulus regulation of cellular process pattern recognition receptor signaling pathway response to stimulus regulation of signal transduction response to biotic stimulus intracellular signal transduction cell communication immune response-activating signaling pathway positive regulation of immune response regulation of immune system process signal transduction positive regulation of immune system process innate immune response-activating signaling pathway regulation of biological process immune response response to other organism regulation of innate immune response response to external stimulus regulation of response to stimulus defense response to other organism regulation of pattern recognition receptor signaling pathway positive regulation of defense response activation of innate immune response regulation of immune response activation of immune response cytoplasmic pattern recognition receptor signaling pathway regulation of defense response regulation of response to biotic stimulus biological process involved in interspecies interaction between organisms regulation of response to external stimulus intracellular receptor signaling pathway signaling positive regulation of biological process regulation of cytoplasmic pattern recognition receptor signaling pathway positive regulation of response to stimulus positive regulation of response to external stimulus immune response-regulating signaling pathway regulation of intracellular signal transduction regulation of response to stress response to stress innate immune response response to external biotic stimulus nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway regulation of signaling positive regulation of innate immune response defense response regulation of nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway biological regulation defense response to symbiont immune system process regulation of cell communication cellular process apoptotic process cell death programmed cell death regulation of apoptotic process regulation of programmed cell death non-canonical NF-kappaB signal transduction intracellular signaling cassette toll-like receptor signaling pathway regulation of toll-like receptor signaling pathway protein polyubiquitination primary metabolic process protein ubiquitination macromolecule modification metabolic process protein metabolic process macromolecule metabolic process post-translational protein modification protein modification process protein modification by small protein conjugation protein modification by small protein conjugation or removal necroptotic process programmed necrotic cell death regulation of necroptotic process regulation of programmed necrotic cell death response to decreased oxygen levels response to hypoxia response to oxygen levels response to abiotic stimulus cell surface receptor signaling pathway response to cytokine cytokine-mediated signaling pathway response to peptide cellular response to tumor necrosis factor response to chemical tumor necrosis factor-mediated signaling pathway cellular response to cytokine stimulus response to tumor necrosis factor regulation of protein modification process positive regulation of protein metabolic process regulation of protein ubiquitination positive regulation of post-translational protein modification regulation of primary metabolic process positive regulation of metabolic process positive regulation of protein modification process positive regulation of macromolecule metabolic process regulation of protein modification by small protein conjugation or removal positive regulation of protein monoubiquitination positive regulation of cellular process positive regulation of protein modification by small protein conjugation or removal positive regulation of protein ubiquitination regulation of post-translational protein modification regulation of protein metabolic process regulation of macromolecule metabolic process protein monoubiquitination regulation of protein monoubiquitination regulation of metabolic process protein K63-linked ubiquitination regulation of protein K63-linked ubiquitination positive regulation of protein K63-linked ubiquitination regulation of protein polyubiquitination positive regulation of protein polyubiquitination response to organophosphorus response to oxygen-containing compound response to nitrogen compound response to purine-containing compound response to cAMP response to organic cyclic compound regulation of cysteine-type endopeptidase activity regulation of catalytic activity regulation of peptidase activity regulation of molecular function regulation of proteolysis proteolysis regulation of hydrolase activity regulation of endopeptidase activity regulation of cellular component organization negative regulation of biological process ripoptosome assembly cellular component organization cellular component biogenesis regulation of protein-containing complex assembly cellular component assembly protein-containing complex assembly negative regulation of cellular process negative regulation of ripoptosome assembly involved in necroptotic process cellular component organization or biogenesis negative regulation of cellular component organization protein-containing complex organization ripoptosome assembly involved in necroptotic process regulation of cellular component biogenesis negative regulation of protein-containing complex assembly regulation of ripoptosome assembly involved in necroptotic process positive regulation of cell communication positive regulation of signal transduction positive regulation of canonical NF-kappaB signal transduction positive regulation of intracellular signal transduction canonical NF-kappaB signal transduction regulation of canonical NF-kappaB signal transduction positive regulation of signaling negative regulation of programmed cell death negative regulation of apoptotic process positive regulation of protein K48-linked ubiquitination regulation of protein K48-linked ubiquitination protein K48-linked ubiquitination catabolic process proteolysis involved in protein catabolic process proteasomal protein catabolic process protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process macromolecule catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process ubiquitin-dependent protein catabolic process regulation of non-canonical NF-kappaB signal transduction response to alcohol response to ethanol negative regulation of necroptotic process negative regulation of programmed necrotic cell death regulation of RIG-I signaling pathway RIG-I signaling pathway regulation of inflammatory response inflammatory response cell population proliferation regulation of cell population proliferation cell cycle regulation of cell cycle reactive oxygen species metabolic process regulation of reactive oxygen species metabolic process regulation of developmental process cellular developmental process cell differentiation regulation of cell differentiation	cell periphery protein-containing complex cellular anatomical structure plasma membrane protein complex membrane plasma membrane plasma membrane signaling receptor complex membrane protein complex CD40 receptor complex receptor complex intracellular anatomical structure cytoplasm cytosol intracellular organelle cell periphery protein-containing complex cellular anatomical structure plasma membrane protein complex membrane plasma membrane plasma membrane signaling receptor complex membrane protein complex CD40 receptor complex receptor complex intracellular anatomical structure cytoplasm cytosol intracellular organelle XY body sex chromosome organelle membraneless organelle intracellular membraneless organelle chromosome cytoplasmic side of plasma membrane cytoplasmic side of membrane side of membrane membrane-bounded organelle nucleus intracellular membrane-bounded organelle
C, D	Caspase-9	SH3 domain binding protein binding binding protein domain specific binding identical protein binding peptidase activity catalytic activity, acting on a protein hydrolase activity catalytic activity cysteine-type peptidase activity cysteine-type endopeptidase activity endopeptidase activity enzyme regulator activity enzyme activator activity SH3 domain binding protein binding binding protein domain specific binding identical protein binding peptidase activity catalytic activity, acting on a protein hydrolase activity catalytic activity cysteine-type peptidase activity cysteine-type endopeptidase activity endopeptidase activity enzyme regulator activity enzyme activator activity molecular function activator activity molecular function regulator activity kinase binding enzyme binding protein kinase binding	cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process leukocyte apoptotic process apoptotic process cell death programmed cell death response to ischemia glial cell apoptotic process regulation of biological process positive regulation of programmed cell death cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process leukocyte apoptotic process apoptotic process cell death programmed cell death response to ischemia glial cell apoptotic process regulation of biological process positive regulation of programmed cell death regulation of cellular process regulation of apoptotic process biological regulation positive regulation of biological process regulation of programmed cell death positive regulation of apoptotic process positive regulation of cellular process neuron apoptotic process positive regulation of neuron apoptotic process regulation of neuron apoptotic process response to ketone response to lipid cellular response to endogenous stimulus response to hormone response to steroid hormone cellular response to ketone cellular response to steroid hormone stimulus response to organic cyclic compound cellular response to hormone stimulus response to endogenous stimulus cellular response to dexamethasone stimulus response to glucocorticoid cellular response to organic cyclic compound cellular response to glucocorticoid stimulus response to oxygen-containing compound cellular response to oxygen-containing compound cellular response to corticosteroid stimulus response to corticosteroid cellular response to chemical stimulus response to chemical cellular response to lipid response to dexamethasone fibroblast apoptotic process response to decreased oxygen levels response to hypoxia response to oxygen levels response to abiotic stimulus developmental process multicellular organism development multicellular organismal process anatomical structure development animal organ development kidney development renal system development system development signaling intracellular signal transduction cell communication signal transduction in response to DNA damage signal transduction apoptotic signaling pathway intrinsic apoptotic signaling pathway epithelial cell apoptotic process primary metabolic process gene expression macromolecule biosynthetic process protein maturation biosynthetic process proteolysis protein processing metabolic process protein metabolic process macromolecule metabolic process intrinsic apoptotic signaling pathway in response to DNA damage cellular developmental process hemopoiesis platelet morphogenesis cell development cell morphogenesis anatomical structure morphogenesis myeloid cell differentiation cell differentiation platelet formation anatomical structure formation involved in morphogenesis response to light stimulus cellular response to radiation response to UV cellular response to environmental stimulus cellular response to light stimulus response to radiation cellular response to abiotic stimulus cellular response to UV response to cobalt ion response to metal ion biological process involved in interspecies interaction between organisms response to other organism response to external stimulus response to lipopolysaccharide response to biotic stimulus response to bacterium response to external biotic stimulus response to molecule of bacterial origin response to estradiol	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle intracellular organelle mitochondrion organelle intracellular membrane-bounded organelle protein-containing complex catalytic complex caspase complex peptidase complex endopeptidase complex cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle intracellular organelle mitochondrion organelle intracellular membrane-bounded organelle protein-containing complex catalytic complex caspase complex peptidase complex endopeptidase complex apoptosome nucleus

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR048875	BIRC2/3-like, UBA domain	Domain
A, B	IPR001370	BIR repeat	Repeat
A, B	IPR001841	Zinc finger, RING-type	Domain
A, B	IPR050784	Inhibitor of Apoptosis	Family
A, B	IPR011029	Death-like domain superfamily	Homologous Superfamily
A, B	IPR041933	BIRC2/BIRC3, UBA domain	Domain
A, B	IPR001315	CARD domain	Domain
C, D	IPR029030	Caspase-like domain superfamily	Homologous Superfamily
C, D	IPR001309	Peptidase C14, p20 domain	Domain
C, D	IPR011600	Peptidase C14, caspase domain	Domain
C, D	IPR016129	Peptidase family C14A, His active site	Active Site
C, D	IPR042147	CASP9, CARD domain	Domain
C, D	IPR015917	Peptidase C14A, caspase catalytic domain	Domain
C, D	IPR011029	Death-like domain superfamily	Homologous Superfamily
C, D	IPR033139	Peptidase family C14A, cysteine active site	Active Site
C, D	IPR002138	Peptidase C14, caspase non-catalytic subunit p10	Domain
C, D	IPR001315	CARD domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B	Pharos: Q13490	leukemia breast carcinoma HIV infectious disease breast cancer gastric cancer HIV Coinfection plasma cell myeloma gastric neoplasm psoriasis dermatomyositis hereditary diffuse gastric adenocarcinoma juvenile dermatomyositis ovarian cancer tuberculosis
C, D	Pharos: P55211	retinal detachment transient ischemic attack brain ischemia peripheral nervous system disease prostate cancer Edema peripheral neuropathy nervous system disorder tuberculosis adrenal cortex carcinoma cancer intestinal disease lymphatic system disease alcoholic pancreatitis liver disease retinal detachment transient ischemic attack brain ischemia peripheral nervous system disease prostate cancer Edema peripheral neuropathy nervous system disorder tuberculosis adrenal cortex carcinoma cancer intestinal disease lymphatic system disease alcoholic pancreatitis liver disease breast disease hematologic disease lung disease

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.