3E9S
A new class of papain-like protease/deubiquitinase inhibitors blocks SARS virus replication
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d3e9sa2 | Alpha and beta proteins (a+b) | Cysteine proteinases | Cysteine proteinases | Papain-like viral protease catalytic domain | automated matches | SARS-CoV (Severe acute respiratory syndrome-related coronavirus ) [TaxId: 694009 ], | SCOPe (2.08) |
A | d3e9sa1 | Alpha and beta proteins (a+b) | beta-Grasp (ubiquitin-like) | Ubiquitin-like | automated matches | automated matches | SARS-CoV (Severe acute respiratory syndrome-related coronavirus ) [TaxId: 694009 ], | SCOPe (2.08) |
A | d3e9sa3 | Artifacts | Tags | Tags | Tags | N-terminal Tags | SARS-CoV (Severe acute respiratory syndrome-related coronavirus ) [TaxId: 694009 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Papain-like protease PLpro-like | 8051171 | 4007227 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Cysteine proteinases | 8091717 | 3001808 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Ubiquitin-like | 8091719 | 3000157 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | PLpro Zn-binding domain-like | 8091718 | 3002538 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Viral_protease_N | e3e9sA1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Viral_protease_N | ECOD (1.6) |
A | Viral_protease_C | e3e9sA2 | A: a+b complex topology | X: Cysteine proteinases-like | H: Cysteine proteinases (From Topology) | T: Cysteine proteinases | F: Viral_protease_C | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.10.20.540 | Alpha Beta | Roll | Ubiquitin-like (UB roll) | Papain-like viral protease, N-terminal domain | CATH (4.3.0) |
A | 1.10.8.1190 | Mainly Alpha | Orthogonal Bundle | Helicase, Ruva Protein | domain 3 | CATH (4.3.0) |
A | 2.60.120.1680 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF08715 | Coronavirus papain-like peptidase (CoV_peptidase) | Coronavirus papain-like peptidase | - | Family |