3EPD
CryoEM structure of poliovirus receptor bound to poliovirus type 3
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
C [auth 1] | SCOP2 Family | Picornaviridae-like VP (VP1, VP2, VP3 and VP4) | 8077430 | 4003466 | SCOP2 (2022-06-29) |
C [auth 1] | SCOP2 Superfamily | Positive stranded ssRNA viruses-like | 8077431 | 3000918 | SCOP2 (2022-06-29) |
F [auth 3] | SCOP2 Family | Picornaviridae-like VP (VP1, VP2, VP3 and VP4) | 8068011 | 4003466 | SCOP2 (2022-06-29) |
F [auth 3] | SCOP2 Superfamily | Positive stranded ssRNA viruses-like | 8068012 | 3000918 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth R] | I-set_8 | e3epdR2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: I-set_8 | ECOD (1.6) |
A [auth R] | V-set_15 | e3epdR1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_15 | ECOD (1.6) |
C [auth 1] | Rhv_5 | e3epd12 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Rhv_5 | ECOD (1.6) |
D [auth 2] | Rhv_1 | e3epd21 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Rhv_1 | ECOD (1.6) |
E [auth 4] | Pico_P1A_N | e3epd41 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Pico_P1A_N | ECOD (1.6) |
F [auth 3] | Rhv_3 | e3epd31 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Rhv_3 | ECOD (1.6) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
A [auth R] | PVR (Poliovirus receptor) | 1V-1C-LIKE | Homo sapiens (human) | PVR | V-LIKE-DOMAIN V-LIKE, C-LIKE-DOMAIN C-LIKE | RPI | 1V-1C-LIKE | IMGT (202507-0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth R] | PF07686 | Immunoglobulin V-set domain (V-set) | Immunoglobulin V-set domain | This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others. | Domain |
A [auth R] | PF08205 | CD80-like C2-set immunoglobulin domain (C2-set_2) | CD80-like C2-set immunoglobulin domain | These domains belong to the immunoglobulin superfamily. | Domain |
C [auth 1] | PF00073 | picornavirus capsid protein (Rhv) | picornavirus capsid protein | CAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornavi ... | Domain |
D [auth 2] | PF00073 | picornavirus capsid protein (Rhv) | picornavirus capsid protein | CAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornavi ... | Domain |
E [auth 4] | PF02226 | Picornavirus coat protein (VP4) (Pico_P1A) | Picornavirus coat protein (VP4) | - | Family |
F [auth 3] | PF00073 | picornavirus capsid protein (Rhv) | picornavirus capsid protein | CAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornavi ... | Domain |