3EVW
Crystal structure of the Mimivirus NDK R107G mutant complexed with dTDP
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
D | SCOP2B Superfamily | Nucleoside diphosphate kinase, NDK | 8037740 | 3001175 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Nucleoside diphosphate kinase, NDK | 8037740 | 3001175 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Nucleoside diphosphate kinase, NDK | 8037740 | 3001175 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Nucleoside diphosphate kinase, NDK | 8037740 | 3001175 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Nucleoside diphosphate kinase, NDK | 8037740 | 3001175 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Nucleoside diphosphate kinase, NDK | 8037740 | 3001175 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
D | NDK | e3evwD1 | A: a+b two layers | X: Alpha-beta plaits | H: Nucleoside diphosphate kinases (From Topology) | T: Nucleoside diphosphate kinases | F: NDK | ECOD (1.6) |
F | NDK | e3evwF1 | A: a+b two layers | X: Alpha-beta plaits | H: Nucleoside diphosphate kinases (From Topology) | T: Nucleoside diphosphate kinases | F: NDK | ECOD (1.6) |
A | NDK | e3evwA1 | A: a+b two layers | X: Alpha-beta plaits | H: Nucleoside diphosphate kinases (From Topology) | T: Nucleoside diphosphate kinases | F: NDK | ECOD (1.6) |
B | NDK | e3evwB1 | A: a+b two layers | X: Alpha-beta plaits | H: Nucleoside diphosphate kinases (From Topology) | T: Nucleoside diphosphate kinases | F: NDK | ECOD (1.6) |
C | NDK | e3evwC1 | A: a+b two layers | X: Alpha-beta plaits | H: Nucleoside diphosphate kinases (From Topology) | T: Nucleoside diphosphate kinases | F: NDK | ECOD (1.6) |
E | NDK | e3evwE1 | A: a+b two layers | X: Alpha-beta plaits | H: Nucleoside diphosphate kinases (From Topology) | T: Nucleoside diphosphate kinases | F: NDK | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
D | 3.30.70.141 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | Nucleoside diphosphate kinase-like domain | CATH (4.3.0) |
F | 3.30.70.141 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | Nucleoside diphosphate kinase-like domain | CATH (4.3.0) |
A | 3.30.70.141 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | Nucleoside diphosphate kinase-like domain | CATH (4.3.0) |
B | 3.30.70.141 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | Nucleoside diphosphate kinase-like domain | CATH (4.3.0) |
C | 3.30.70.141 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | Nucleoside diphosphate kinase-like domain | CATH (4.3.0) |
E | 3.30.70.141 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | Nucleoside diphosphate kinase-like domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR023005 | Nucleoside diphosphate kinase, active site | Active Site | |
IPR034907 | Nucleoside diphosphate kinase-like domain | Domain | |
IPR036850 | Nucleoside diphosphate kinase-like domain superfamily | Homologous Superfamily | |
IPR001564 | Nucleoside diphosphate kinase | Family |