Green fluorescent protein bound to minimizer nanobody
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | d3g9aa_ | Alpha and beta proteins (a+b) | GFP-like | GFP-like | Fluorescent proteins | Green fluorescent protein, GFP | Jellyfish (Aequorea victoria ) [TaxId: 6100 ], | SCOPe (2.08) |
| B | d3g9ab1 | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | V set domains (antibody variable domain-like) | automated matches | alpaca (Camelus dromedarius ) [TaxId: 9838 ], | SCOPe (2.08) |
| B | d3g9ab2 | Artifacts | Tags | Tags | Tags | C-terminal Tags | alpaca (Camelus dromedarius ) [TaxId: 9838 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | adh_short | e3g9aA1 | A: alpha arrays | X: Alpha-beta plaits | H: Phage tail protein-like | T: Transmembrane protein 14A | F: adh_short | ECOD (v295.2) |
| B | Spt4 | e3g9aB1 | A: alpha arrays | X: Cystatin-like | H: NTF2-like | T: NTF2-like | F: Spt4 | ECOD (v295.2) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| A | 2.40.155.10 | Mainly Beta | Beta Barrel | Green Fluorescent Protein | Green fluorescent protein | CATH (4.3.0) |
| B | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
IMGT Antibody Annotation IMGT Database Homepage
| Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
|---|---|---|---|---|---|---|---|---|
| Minimizer nanobody | VH | Lama glama (llama) | IGHV3S1*01, IGHJ4*01 | V-DOMAIN VH | IG | (VH) | IMGT (202642-0) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| Green fluorescent protein | - | - | ||
| Minimizer | - | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR000786 | Green fluorescent protein, GFP | Family | |
| IPR011584 | Green fluorescent protein-related | Family | |
| IPR009017 | Green fluorescent protein | Homologous Superfamily |