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 3KPS | pdb_00003kps

Crystal Structure of the LC13 TCR in complex with HLA B*4405 bound to EEYLQAFTY a self peptide from the ABCD3 protein

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ed3kpse1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) T-cell antigen receptor human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Ed3kpse2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain-like) T-cell antigen receptor human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Dd3kpsd1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) T-cell antigen receptor human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Dd3kpsd2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain-like) T-cell antigen receptor human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Bd3kpsb_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain-like) beta2-microglobulin human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Ad3kpsa2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain-like) Class I MHC, alpha-3 domain human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Ad3kpsa1 Alpha and beta proteins (a+b) MHC antigen-recognition domain MHC antigen-recognition domain MHC antigen-recognition domain Class I MHC, alpha-1 and alpha-2 domains human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
EAAA_lid_3e3kpsE1 A: alpha arraysX: Alpha-beta plaitsH: Phage tail protein-likeT: Transmembrane protein 14AF: AAA_lid_3ECOD (v295.2)
DAAA_lid_3e3kpsD1 A: alpha arraysX: Alpha-beta plaitsH: Phage tail protein-likeT: Transmembrane protein 14AF: AAA_lid_3ECOD (v295.2)
BAAA_lid_3e3kpsB1 A: alpha arraysX: Alpha-beta plaitsH: Phage tail protein-likeT: Transmembrane protein 14AF: AAA_lid_3ECOD (v295.2)
AAAA_lid_3e3kpsA1 A: alpha arraysX: Alpha-beta plaitsH: Phage tail protein-likeT: Transmembrane protein 14AF: AAA_lid_3ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
E2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
D2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
B2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
A3.30.500.10 Alpha Beta 2-Layer Sandwich Murine Class I Major Histocompatibility Complex, H2-DB Chain A, domain 1CATH (4.3.0)
A2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)

IMGT Antibody Annotation IMGT Database Homepage

ChainProtein NameDescriptionOrganism NameGene Allele Name(s)Domain Name(s)Receptor TypeReceptor DescriptionProvenance Source
TR LC13 TR-BETA-2 Homo sapiens (human) TRBV7-8*01, TRBV7-8*03, TRBJ2-3*01, TRBC2*01, TRBC2*02 V-DOMAIN V-BETA, C-DOMAIN C-BETA-2 TR TR-ALPHA_BETA-2 IMGT (202640-0)
TR LC13 TR-ALPHA Homo sapiens (human) TRAV26-2*01, TRAJ52*01, TRAC*01 V-DOMAIN V-ALPHA, C-DOMAIN C-ALPHA TR TR-ALPHA_BETA-2 IMGT (202640-0)
MH1 HLA-B*4405 B2M Homo sapiens (human) B2M*01, B2M*02 C-LIKE-DOMAIN C-LIKE MH MH1-ALPHA_B2M IMGT (202640-0)
MH1 HLA-B*4405 I-ALPHA Homo sapiens (human) HLA-B*4402, HLA-B*4403, HLA-B*4404, HLA-B*4405, HLA-B*4410, HLA-B*4414, HLA-B*4416, HLA-B*4417, HLA-B*4420, HLA-B*4421, HLA-B*4427, HLA-B*4428, HLA-B*4429, HLA-B*4430, HLA-B*4431, HLA-B*4704, HLA-B*4438, HLA-B*4433, HLA-B*4445, HLA-B*4436, HLA-B*4441, HLA-B*4443, HLA-B*4435, HLA-B*4442, HLA-B*4437, HLA-B*4447, HLA-B*4448, HLA-B*4454, HLA-B*4453, HLA-B*4451, HLA-B*4465, HLA-B*4462, HLA-B*4464, HLA-B*4459, HLA-B*4466, HLA-B*4477, HLA-B*4488, HLA-B*4473, HLA-B*4482, HLA-B*4470, HLA-B*4478, HLA-B*4474, HLA-B*4487, HLA-B*4471, HLA-B*4479, HLA-B*4468, HLA-B*4476, HLA-B*4496, HLA-B*4491, HLA-B*4499, HLA-B*4492, HLA-B*4498, HLA-B*4494, HLA-B*4489 G-DOMAIN G-ALPHA1, G-DOMAIN G-ALPHA2, C-LIKE-DOMAIN C-LIKE MH MH1-ALPHA_B2M IMGT (202640-0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF07654Immunoglobulin C1-set domain (C1-set)Immunoglobulin C1-set domainDomain
PF09291Domain of unknown function (DUF1968) (DUF1968)Domain of unknown function (DUF1968)Members of this family are found in mammalian T-cell antigen receptor, and adopt an immunoglobulin-like beta-sandwich fold, with seven strands in two beta-sheets in a Greek-key topology. Their exact function has not, as yet, been determined. Domain
PF07654Immunoglobulin C1-set domain (C1-set)Immunoglobulin C1-set domainDomain
PF00129Class I Histocompatibility antigen, domains alpha 1 and 2 (MHC_I)Class I Histocompatibility antigen, domains alpha 1 and 2Domain
PF07654Immunoglobulin C1-set domain (C1-set)Immunoglobulin C1-set domainDomain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
LC13 TCR beta chain---
LC13 TCR alpha chain---
EEYLQAFTY, self peptide from the ATP binding cassette protein ABCD3---
Beta-2-microglobulin
HLA class I histocompatibility antigen, B-44 alpha chain---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
IPR003006Immunoglobulin/major histocompatibility complex, conserved siteConserved Site
IPR013783Immunoglobulin-like foldHomologous Superfamily
IPR007110Immunoglobulin-like domainDomain
IPR050160Major Histocompatibility Complex/ImmunoglobulinFamily
IPR003597Immunoglobulin C1-setDomain
IPR015707Beta-2-MicroglobulinFamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
:  P61769