Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Bd3lnnb_ Membrane and cell surface proteins and peptides HlyD-like secretion proteins HlyD-like secretion proteins automated matches automated matches (Cupriavidus metallidurans CH34 ) [TaxId: 266264 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B SuperfamilySingle hybrid motif 8092221 3001880 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyHlyD beta-barrel domain-like 8092220 3002000 SCOP2B (2022-06-29)
BSCOP2B SuperfamilySingle hybrid motif 8092221 3001880 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyHlyD beta-barrel domain-like 8092220 3002000 SCOP2B (2022-06-29)
ASCOP2 FamilyHlyD-like secretion proteins 8092219 4003003 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyHlyD beta-barrel domain-like 8092220 3002000 SCOP2 (2022-06-29)
ASCOP2 SuperfamilySingle hybrid motif 8092221 3001880 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyHlyD C-terminal domain-like 8092222 3002572 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BHlyD_D23_Ce3lnnB2 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: HlyD_D23_CECOD (1.6)
BPRK03598_likee3lnnB5 A: alpha bundlesX: helical hairpin of HlyD-like secretion proteins (From Topology)H: helical hairpin of HlyD-like secretion proteins (From Topology)T: helical hairpin of HlyD-like secretion proteinsF: PRK03598_likeECOD (1.6)
BBiotin_lipoyl_1e3lnnB3 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Single hybrid motifF: Biotin_lipoyl_1ECOD (1.6)
AHlyD_D23_Ce3lnnA2 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: HlyD_D23_CECOD (1.6)
A8a0102e3lnnA1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: 8a0102ECOD (1.6)
APRK03598_likee3lnnA4 A: alpha bundlesX: helical hairpin of HlyD-like secretion proteins (From Topology)H: helical hairpin of HlyD-like secretion proteins (From Topology)T: helical hairpin of HlyD-like secretion proteinsF: PRK03598_likeECOD (1.6)
ABiotin_lipoyl_1e3lnnA3 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Single hybrid motifF: Biotin_lipoyl_1ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF25954CusB-like, beta-barrel domain (Beta-barrel_RND_2)CusB-like, beta-barrel domainThis domain is found in the periplasmic membrane fusion proteins (MFPs) that are components of the RND tripartite drug efflux pumps. MFPs bridge the outer membrane factor and an inner membrane transporter. One characterized member is the Cation efflu ...This domain is found in the periplasmic membrane fusion proteins (MFPs) that are components of the RND tripartite drug efflux pumps. MFPs bridge the outer membrane factor and an inner membrane transporter. One characterized member is the Cation efflux system protein CusB which is an essential component of the CusCBA tripartite efflux system from Escherichia coli. This protein plays an essential role in bridging the inner membrane efflux pump CusA and the outer membrane channel CusC to mediate resistance to Cu+ and Ag+ ions. CusB is a multidomain protein and assembles into homohexamer that forms a narrow channel defined by an alpha-helical domain and a barrel-sandwich hybrid domain in which it is inserted [1,2]. The remaining two domains, one of which is represented by this entry, form a cap-like structure that engages in interactions with the CusA trimer. The domain represented in this entry folds into a six-stranded closed beta-barrel with a greek-key topology which has a structural similarity to the C-terminal domain of alanine racemase. This domain is interrupted by the barrel-sandwich hybrid domain which is inserted after the first beta-strand of the barrel. This model does not include the N-terminal strand.
Domain
A, B
PF25973CzcB-like, barrel-sandwich hybrid domain (BSH_CzcB)CzcB-like, barrel-sandwich hybrid domainThis domain is found in the Cobalt-zinc-cadmium resistance protein CzcB and its paralogue Nickel and cobalt resistance protein CnrB from Cupriavidus metallidurans and related proteins. CzcB is a crucial component of the CzcCBA protein complex, which ...This domain is found in the Cobalt-zinc-cadmium resistance protein CzcB and its paralogue Nickel and cobalt resistance protein CnrB from Cupriavidus metallidurans and related proteins. CzcB is a crucial component of the CzcCBA protein complex, which mediates heavy metal resistance in bacteria through an active cation efflux mechanism [1]. CzcB binds to CzcA, which in turn is bound to CzcC, forming the complete CzcCBA complex.
Domain
A, B
PF25967RND MFPs, C-terminal permuted SH3 domain (RND-MFP_C)RND MFPs, C-terminal permuted SH3 domainThis domain is found in the periplasmic membrane fusion proteins (MFPs) that are components of the RND tripartite drug efflux pumps. MFPs bridge the outer membrane factor and an inner membrane transporter. The most characterized MFP AcrA connects the ...This domain is found in the periplasmic membrane fusion proteins (MFPs) that are components of the RND tripartite drug efflux pumps. MFPs bridge the outer membrane factor and an inner membrane transporter. The most characterized MFP AcrA connects the outer membrane factor TolC and the resistance- nodulation-division-type efflux transporter AcrB, which is a major multidrug efflux pump in Escherichia coli [1]. Another member MexA, a Pseudomonas aeruginosa homolog of AcrA, is a component of the tripartite multidrug efflux system MexAB-OprM which is a major factor for antibiotic resistance by exporting a large variety of antimicrobial compounds [2]. The domain represented by this entry folds into an open barrel with a circularly permuted topology of SH3-like barrels. This domain is involved in interactions with efflux pump membrane transporter.
Domain