3LYF | pdb_00003lyf

Crystal Structure of the Rift Valley Fever Virus Nucleocapsid Protein

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d3lyfd_	All alpha proteins	Tenuivirus/Phlebovirus nucleocapsid protein-like	Tenuivirus/Phlebovirus nucleocapsid protein	Phlebovirus nucleocapsid protein	Rift Valley fever virus (RVFV) N protein	RVFV (Rift Valley fever virus ) [TaxId: 11588 ],	SCOPe (2.08)
C	d3lyfc_	All alpha proteins	Tenuivirus/Phlebovirus nucleocapsid protein-like	Tenuivirus/Phlebovirus nucleocapsid protein	Phlebovirus nucleocapsid protein	Rift Valley fever virus (RVFV) N protein	RVFV (Rift Valley fever virus ) [TaxId: 11588 ],	SCOPe (2.08)
B	d3lyfb_	All alpha proteins	Tenuivirus/Phlebovirus nucleocapsid protein-like	Tenuivirus/Phlebovirus nucleocapsid protein	Phlebovirus nucleocapsid protein	Rift Valley fever virus (RVFV) N protein	RVFV (Rift Valley fever virus ) [TaxId: 11588 ],	SCOPe (2.08)
A	d3lyfa_	All alpha proteins	Tenuivirus/Phlebovirus nucleocapsid protein-like	Tenuivirus/Phlebovirus nucleocapsid protein	Phlebovirus nucleocapsid protein	Rift Valley fever virus (RVFV) N protein	RVFV (Rift Valley fever virus ) [TaxId: 11588 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	Cytochrome_CBB3	e3lyfD1	A: alpha arrays	X: Alpha-beta plaits	H: Phage tail protein-like	T: Transmembrane protein 14A	F: Cytochrome_CBB3	ECOD (v295.2)
C	Cytochrome_CBB3	e3lyfC1	A: alpha arrays	X: Alpha-beta plaits	H: Phage tail protein-like	T: Transmembrane protein 14A	F: Cytochrome_CBB3	ECOD (v295.2)
B	Cytochrome_CBB3	e3lyfB1	A: alpha arrays	X: Alpha-beta plaits	H: Phage tail protein-like	T: Transmembrane protein 14A	F: Cytochrome_CBB3	ECOD (v295.2)
A	Ribosom_S30AE_C	e3lyfA1	A: alpha arrays	X: C-terminal domain of envelope glycoprotein H	H: C-terminal domain of envelope glycoprotein H	T: Ribosome-associated factor Y	F: Ribosom_S30AE_C	ECOD (v295.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Nucleocapsid protein	RNA binding binding nucleic acid binding identical protein binding protein binding	-	host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle host cell cytoplasm part host cell endoplasmic reticulum-Golgi intermediate compartment host cell cytoplasm protein-containing complex ribonucleoprotein complex host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle host cell cytoplasm part host cell endoplasmic reticulum-Golgi intermediate compartment host cell cytoplasm protein-containing complex ribonucleoprotein complex viral nucleocapsid viral capsid virion component host cell Golgi apparatus

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR015971	Nucleocapsid, Phlebovirus	Family
A, B, C, D	IPR009522	Nucleocapsid, Phlebovirus/Tenuivirus	Family