3LYQ | pdb_00003lyq

Crystal structure of IpgB2 from Shigella flexneri


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B SuperfamilySopE-like GEF domain 8092767 3001205 SCOP2B (2022-06-29)
ASCOP2B SuperfamilySopE-like GEF domain 8092767 3001205 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BRVPe3lyqB1 A: a/b three-layered sandwichesX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.1)
ARVPe3lyqA1 A: a/b three-layered sandwichesX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B1.10.4120.20 Mainly Alpha Orthogonal Bundle SopE-like GEF fold CATH (4.3.0)
A1.10.4120.20 Mainly Alpha Orthogonal Bundle SopE-like GEF fold CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF03278IpaB/EvcA family (IpaB_EvcA)IpaB/EvcA family- Family

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR004959Bacterial effector protein IpgB-likeFamily