3NK6
Structure of the Nosiheptide-resistance methyltransferase
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | RNA 2'-O ribose methyltransferase substrate binding domain | 8046339 | 4002711 | SCOP2 (2022-06-29) |
A | SCOP2 Family | SpoU-like RNA 2'-O ribose methyltransferase | 8095893 | 4002340 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | L30e-like | 8095894 | 3001739 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | alpha/beta knot | 8095895 | 3001122 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | L30e-like | 8095894 | 3001739 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | alpha/beta knot | 8095895 | 3001122 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | TSNR_N | e3nk6A1 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: L30e-like (From Topology) | T: L30e-like | F: TSNR_N | ECOD (1.6) |
A | SpoU_methylase | e3nk6A2 | A: a/b three-layered sandwiches | X: alpha/beta knot (From Topology) | H: alpha/beta knot (From Topology) | T: alpha/beta knot | F: SpoU_methylase | ECOD (1.6) |
B | TSNR_N | e3nk6B1 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: L30e-like (From Topology) | T: L30e-like | F: TSNR_N | ECOD (1.6) |
B | SpoU_methylase | e3nk6B2 | A: a/b three-layered sandwiches | X: alpha/beta knot (From Topology) | H: alpha/beta knot (From Topology) | T: alpha/beta knot | F: SpoU_methylase | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.1330.30 | Alpha Beta | 2-Layer Sandwich | 60s Ribosomal Protein L30 | Chain: A | CATH (4.3.0) |
A | 3.40.1280.10 | Alpha Beta | 3-Layer(aba) Sandwich | Alpha/beta knot | SPOUT methyltransferase, trefoil knot domain | CATH (4.3.0) |
B | 3.30.1330.30 | Alpha Beta | 2-Layer Sandwich | 60s Ribosomal Protein L30 | Chain: A | CATH (4.3.0) |
B | 3.40.1280.10 | Alpha Beta | 3-Layer(aba) Sandwich | Alpha/beta knot | SPOUT methyltransferase, trefoil knot domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF04705 | Thiostrepton-resistance methylase, N terminus (TSNR_N) | Thiostrepton-resistance methylase, N terminus | - | Family | |
PF00588 | SpoU rRNA Methylase family (SpoU_methylase) | SpoU rRNA Methylase family | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR001537 | tRNA/rRNA methyltransferase, SpoU type | Domain | |
IPR029026 | tRNA (guanine-N1-)-methyltransferase, N-terminal | Homologous Superfamily | |
IPR051259 | Ribosomal RNA Methyltransferase | Family | |
IPR029028 | Alpha/beta knot methyltransferases | Homologous Superfamily | |
IPR006795 | Thiostrepton-resistance methylase, N-terminal | Domain | |
IPR029064 | Ribosomal protein eL30-like superfamily | Homologous Superfamily |