Crystal Structure of Taxadiene Synthase from Pacific Yew (Taxus brevifolia) in complex with Mg2+ and 2-fluorogeranylgeranyl diphosphate
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | Lipase_3 | e3p5rA4 | A: alpha bundles | X: DEATH domain | H: Ten stranded beta/alpha barrel | T: Ten stranded beta/alpha barrel | F: Lipase_3 | ECOD (develop294) |
| A | Pectate_lyase_2 | e3p5rA3 | A: alpha bundles | X: Four-helical up-and-down bundle | H: Thymidylate synthase/dCMP hydroxymethylase | T: Thymidylate synthase/dCMP hydroxymethylase | F: Pectate_lyase_2 | ECOD (develop294) |
| B | UvrB_inter | e3p5rB1 | A: alpha bundles | X: Anticodon-binding domain of Class II aaRS | H: Anticodon-binding domain of Class II aaRS | T: Anticodon-binding domain of Class II aaRS | F: UvrB_inter | ECOD (develop294) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| A | 1.50.10.130 | Mainly Alpha | Alpha/alpha barrel | Glycosyltransferase | Terpene synthase, N-terminal domain | CATH (4.3.0) |
| A | 1.50.10.160 | Mainly Alpha | Alpha/alpha barrel | Glycosyltransferase | CATH (4.3.0) | |
| A | 1.10.600.10 | Mainly Alpha | Orthogonal Bundle | Farnesyl Diphosphate Synthase | Farnesyl Diphosphate Synthase | CATH (4.3.0) |
| B | 1.50.10.130 | Mainly Alpha | Alpha/alpha barrel | Glycosyltransferase | Terpene synthase, N-terminal domain | CATH (4.3.0) |
| B | 1.50.10.160 | Mainly Alpha | Alpha/alpha barrel | Glycosyltransferase | CATH (4.3.0) | |
| B | 1.10.600.10 | Mainly Alpha | Orthogonal Bundle | Farnesyl Diphosphate Synthase | Farnesyl Diphosphate Synthase | CATH (4.3.0) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR005630 | Terpene synthase, metal-binding domain | Domain | |
| IPR008949 | Isoprenoid synthase domain superfamily | Homologous Superfamily | |
| IPR036965 | Terpene synthase, N-terminal domain superfamily | Homologous Superfamily | |
| IPR034741 | Terpene cyclase-like 1, C-terminal domain | Domain | |
| IPR044814 | Terpene cyclases, class 1, plant | Family | |
| IPR001906 | Terpene synthase, N-terminal domain | Domain | |
| IPR008930 | Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid | Homologous Superfamily | |
| IPR050148 | Terpene synthase-like | Family |














