3Q45

Crystal structure of Dipeptide Epimerase from Cytophaga hutchinsonii complexed with Mg and dipeptide D-Ala-L-Val


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad3q45a2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel Enolase C-terminal domain-like automated matches automated matches (Cytophaga hutchinsonii ATCC 33406 ) [TaxId: 269798 ], SCOPe (2.08)
Ad3q45a1 Alpha and beta proteins (a+b) Enolase N-terminal domain-like Enolase N-terminal domain-like automated matches automated matches (Cytophaga hutchinsonii ATCC 33406 ) [TaxId: 269798 ], SCOPe (2.08)
Bd3q45b2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel Enolase C-terminal domain-like automated matches automated matches (Cytophaga hutchinsonii ATCC 33406 ) [TaxId: 269798 ], SCOPe (2.08)
Bd3q45b1 Alpha and beta proteins (a+b) Enolase N-terminal domain-like Enolase N-terminal domain-like automated matches automated matches (Cytophaga hutchinsonii ATCC 33406 ) [TaxId: 269798 ], SCOPe (2.08)
Cd3q45c2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel Enolase C-terminal domain-like automated matches automated matches (Cytophaga hutchinsonii ATCC 33406 ) [TaxId: 269798 ], SCOPe (2.08)
Cd3q45c1 Alpha and beta proteins (a+b) Enolase N-terminal domain-like Enolase N-terminal domain-like automated matches automated matches (Cytophaga hutchinsonii ATCC 33406 ) [TaxId: 269798 ], SCOPe (2.08)
Dd3q45d2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel Enolase C-terminal domain-like automated matches automated matches (Cytophaga hutchinsonii ATCC 33406 ) [TaxId: 269798 ], SCOPe (2.08)
Dd3q45d1 Alpha and beta proteins (a+b) Enolase N-terminal domain-like Enolase N-terminal domain-like automated matches automated matches (Cytophaga hutchinsonii ATCC 33406 ) [TaxId: 269798 ], SCOPe (2.08)
Ed3q45e2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel Enolase C-terminal domain-like automated matches automated matches (Cytophaga hutchinsonii ATCC 33406 ) [TaxId: 269798 ], SCOPe (2.08)
Ed3q45e1 Alpha and beta proteins (a+b) Enolase N-terminal domain-like Enolase N-terminal domain-like automated matches automated matches (Cytophaga hutchinsonii ATCC 33406 ) [TaxId: 269798 ], SCOPe (2.08)
Fd3q45f2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel Enolase C-terminal domain-like automated matches automated matches (Cytophaga hutchinsonii ATCC 33406 ) [TaxId: 269798 ], SCOPe (2.08)
Fd3q45f1 Alpha and beta proteins (a+b) Enolase N-terminal domain-like Enolase N-terminal domain-like automated matches automated matches (Cytophaga hutchinsonii ATCC 33406 ) [TaxId: 269798 ], SCOPe (2.08)
Gd3q45g2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel Enolase C-terminal domain-like automated matches automated matches (Cytophaga hutchinsonii ATCC 33406 ) [TaxId: 269798 ], SCOPe (2.08)
Gd3q45g1 Alpha and beta proteins (a+b) Enolase N-terminal domain-like Enolase N-terminal domain-like automated matches automated matches (Cytophaga hutchinsonii ATCC 33406 ) [TaxId: 269798 ], SCOPe (2.08)
Hd3q45h2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel Enolase C-terminal domain-like automated matches automated matches (Cytophaga hutchinsonii ATCC 33406 ) [TaxId: 269798 ], SCOPe (2.08)
Hd3q45h1 Alpha and beta proteins (a+b) Enolase N-terminal domain-like Enolase N-terminal domain-like automated matches automated matches (Cytophaga hutchinsonii ATCC 33406 ) [TaxId: 269798 ], SCOPe (2.08)
Id3q45i2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel Enolase C-terminal domain-like automated matches automated matches (Cytophaga hutchinsonii ATCC 33406 ) [TaxId: 269798 ], SCOPe (2.08)
Id3q45i1 Alpha and beta proteins (a+b) Enolase N-terminal domain-like Enolase N-terminal domain-like automated matches automated matches (Cytophaga hutchinsonii ATCC 33406 ) [TaxId: 269798 ], SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AMR_MLE_Ne3q45A1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Enolase N-terminal domain-like (From Topology)T: Enolase N-terminal domain-likeF: MR_MLE_NECOD (1.6)
AMR_MLE_C_1e3q45A2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: MR_MLE_C_1ECOD (1.6)
BMR_MLE_Ne3q45B1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Enolase N-terminal domain-like (From Topology)T: Enolase N-terminal domain-likeF: MR_MLE_NECOD (1.6)
BMR_MLE_C_1e3q45B2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: MR_MLE_C_1ECOD (1.6)
CMR_MLE_Ne3q45C1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Enolase N-terminal domain-like (From Topology)T: Enolase N-terminal domain-likeF: MR_MLE_NECOD (1.6)
CMR_MLE_C_1e3q45C2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: MR_MLE_C_1ECOD (1.6)
DMR_MLE_Ne3q45D1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Enolase N-terminal domain-like (From Topology)T: Enolase N-terminal domain-likeF: MR_MLE_NECOD (1.6)
DMR_MLE_C_1e3q45D2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: MR_MLE_C_1ECOD (1.6)
EMR_MLE_Ne3q45E1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Enolase N-terminal domain-like (From Topology)T: Enolase N-terminal domain-likeF: MR_MLE_NECOD (1.6)
EMR_MLE_C_1e3q45E2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: MR_MLE_C_1ECOD (1.6)
FMR_MLE_Ne3q45F1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Enolase N-terminal domain-like (From Topology)T: Enolase N-terminal domain-likeF: MR_MLE_NECOD (1.6)
FMR_MLE_C_1e3q45F2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: MR_MLE_C_1ECOD (1.6)
GMR_MLE_Ne3q45G1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Enolase N-terminal domain-like (From Topology)T: Enolase N-terminal domain-likeF: MR_MLE_NECOD (1.6)
GMR_MLE_C_1e3q45G2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: MR_MLE_C_1ECOD (1.6)
HMR_MLE_Ne3q45H1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Enolase N-terminal domain-like (From Topology)T: Enolase N-terminal domain-likeF: MR_MLE_NECOD (1.6)
HMR_MLE_C_1e3q45H2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: MR_MLE_C_1ECOD (1.6)
IMR_MLE_Ne3q45I1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Enolase N-terminal domain-like (From Topology)T: Enolase N-terminal domain-likeF: MR_MLE_NECOD (1.6)
IMR_MLE_C_1e3q45I2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: MR_MLE_C_1ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.30.390.10 Alpha Beta 2-Layer Sandwich Enolase-like domain 1CATH (4.3.0)
A3.20.20.120 Alpha Beta Alpha-Beta Barrel TIM Barrel Enolase-like C-terminal domainCATH (4.3.0)
B3.30.390.10 Alpha Beta 2-Layer Sandwich Enolase-like domain 1CATH (4.3.0)
B3.20.20.120 Alpha Beta Alpha-Beta Barrel TIM Barrel Enolase-like C-terminal domainCATH (4.3.0)
C3.30.390.10 Alpha Beta 2-Layer Sandwich Enolase-like domain 1CATH (4.3.0)
C3.20.20.120 Alpha Beta Alpha-Beta Barrel TIM Barrel Enolase-like C-terminal domainCATH (4.3.0)
D3.30.390.10 Alpha Beta 2-Layer Sandwich Enolase-like domain 1CATH (4.3.0)
D3.20.20.120 Alpha Beta Alpha-Beta Barrel TIM Barrel Enolase-like C-terminal domainCATH (4.3.0)
E3.30.390.10 Alpha Beta 2-Layer Sandwich Enolase-like domain 1CATH (4.3.0)
E3.20.20.120 Alpha Beta Alpha-Beta Barrel TIM Barrel Enolase-like C-terminal domainCATH (4.3.0)
F3.30.390.10 Alpha Beta 2-Layer Sandwich Enolase-like domain 1CATH (4.3.0)
F3.20.20.120 Alpha Beta Alpha-Beta Barrel TIM Barrel Enolase-like C-terminal domainCATH (4.3.0)
G3.30.390.10 Alpha Beta 2-Layer Sandwich Enolase-like domain 1CATH (4.3.0)
G3.20.20.120 Alpha Beta Alpha-Beta Barrel TIM Barrel Enolase-like C-terminal domainCATH (4.3.0)
H3.30.390.10 Alpha Beta 2-Layer Sandwich Enolase-like domain 1CATH (4.3.0)
H3.20.20.120 Alpha Beta Alpha-Beta Barrel TIM Barrel Enolase-like C-terminal domainCATH (4.3.0)
I3.30.390.10 Alpha Beta 2-Layer Sandwich Enolase-like domain 1CATH (4.3.0)
I3.20.20.120 Alpha Beta Alpha-Beta Barrel TIM Barrel Enolase-like C-terminal domainCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D, E
PF02746Mandelate racemase / muconate lactonizing enzyme, N-terminal domain (MR_MLE_N)Mandelate racemase / muconate lactonizing enzyme, N-terminal domainSCOP reports fold similarity with enolase N-terminal domain.Domain
A, B, C, D, E
PF13378Enolase C-terminal domain-like (MR_MLE_C)Enolase C-terminal domain-likeThis domain appears at the C-terminus of many of the proteins that carry the MR_MLE_N Pfam:PF02746 domain. EC:4.2.1.40.Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D, E
Mandelate racemase/muconate lactonizing enzyme family; possible chloromuconate cycloisomerase -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR029065Enolase C-terminal domain-likeDomain
A, B, C, D, E
IPR013341Mandelate racemase/muconate lactonizing enzyme, N-terminal domainDomain
A, B, C, D, E
IPR034603Dipeptide epimeraseFamily
A, B, C, D, E
IPR013342Mandelate racemase/muconate lactonizing enzyme, C-terminalDomain
A, B, C, D, E
IPR029017Enolase-like, N-terminalHomologous Superfamily
A, B, C, D, E
IPR036849Enolase-like, C-terminal domain superfamilyHomologous Superfamily