3Q4D

Crystal structure of dipeptide epimerase from Cytophaga hutchinsonii complexed with Mg and dipeptide D-Ala-L-Ala


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad3q4da2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel Enolase C-terminal domain-like automated matches automated matches (Cytophaga hutchinsonii ATCC 33406 ) [TaxId: 269798 ], SCOPe (2.08)
Ad3q4da1 Alpha and beta proteins (a+b) Enolase N-terminal domain-like Enolase N-terminal domain-like automated matches automated matches (Cytophaga hutchinsonii ATCC 33406 ) [TaxId: 269798 ], SCOPe (2.08)
Bd3q4db2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel Enolase C-terminal domain-like automated matches automated matches (Cytophaga hutchinsonii ATCC 33406 ) [TaxId: 269798 ], SCOPe (2.08)
Bd3q4db1 Alpha and beta proteins (a+b) Enolase N-terminal domain-like Enolase N-terminal domain-like automated matches automated matches (Cytophaga hutchinsonii ATCC 33406 ) [TaxId: 269798 ], SCOPe (2.08)
Cd3q4dc2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel Enolase C-terminal domain-like automated matches automated matches (Cytophaga hutchinsonii ATCC 33406 ) [TaxId: 269798 ], SCOPe (2.08)
Cd3q4dc1 Alpha and beta proteins (a+b) Enolase N-terminal domain-like Enolase N-terminal domain-like automated matches automated matches (Cytophaga hutchinsonii ATCC 33406 ) [TaxId: 269798 ], SCOPe (2.08)
Dd3q4dd2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel Enolase C-terminal domain-like automated matches automated matches (Cytophaga hutchinsonii ATCC 33406 ) [TaxId: 269798 ], SCOPe (2.08)
Dd3q4dd1 Alpha and beta proteins (a+b) Enolase N-terminal domain-like Enolase N-terminal domain-like automated matches automated matches (Cytophaga hutchinsonii ATCC 33406 ) [TaxId: 269798 ], SCOPe (2.08)
Ed3q4de2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel Enolase C-terminal domain-like automated matches automated matches (Cytophaga hutchinsonii ATCC 33406 ) [TaxId: 269798 ], SCOPe (2.08)
Ed3q4de1 Alpha and beta proteins (a+b) Enolase N-terminal domain-like Enolase N-terminal domain-like automated matches automated matches (Cytophaga hutchinsonii ATCC 33406 ) [TaxId: 269798 ], SCOPe (2.08)
Fd3q4df2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel Enolase C-terminal domain-like automated matches automated matches (Cytophaga hutchinsonii ATCC 33406 ) [TaxId: 269798 ], SCOPe (2.08)
Fd3q4df1 Alpha and beta proteins (a+b) Enolase N-terminal domain-like Enolase N-terminal domain-like automated matches automated matches (Cytophaga hutchinsonii ATCC 33406 ) [TaxId: 269798 ], SCOPe (2.08)
Gd3q4dg2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel Enolase C-terminal domain-like automated matches automated matches (Cytophaga hutchinsonii ATCC 33406 ) [TaxId: 269798 ], SCOPe (2.08)
Gd3q4dg1 Alpha and beta proteins (a+b) Enolase N-terminal domain-like Enolase N-terminal domain-like automated matches automated matches (Cytophaga hutchinsonii ATCC 33406 ) [TaxId: 269798 ], SCOPe (2.08)
Hd3q4dh2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel Enolase C-terminal domain-like automated matches automated matches (Cytophaga hutchinsonii ATCC 33406 ) [TaxId: 269798 ], SCOPe (2.08)
Hd3q4dh1 Alpha and beta proteins (a+b) Enolase N-terminal domain-like Enolase N-terminal domain-like automated matches automated matches (Cytophaga hutchinsonii ATCC 33406 ) [TaxId: 269798 ], SCOPe (2.08)
Id3q4di2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel Enolase C-terminal domain-like automated matches automated matches (Cytophaga hutchinsonii ATCC 33406 ) [TaxId: 269798 ], SCOPe (2.08)
Id3q4di1 Alpha and beta proteins (a+b) Enolase N-terminal domain-like Enolase N-terminal domain-like automated matches automated matches (Cytophaga hutchinsonii ATCC 33406 ) [TaxId: 269798 ], SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AMR_MLE_Ne3q4dA1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Enolase N-terminal domain-like (From Topology)T: Enolase N-terminal domain-likeF: MR_MLE_NECOD (1.6)
AMR_MLE_C_1e3q4dA2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: MR_MLE_C_1ECOD (1.6)
BMR_MLE_Ne3q4dB1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Enolase N-terminal domain-like (From Topology)T: Enolase N-terminal domain-likeF: MR_MLE_NECOD (1.6)
BMR_MLE_C_1e3q4dB2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: MR_MLE_C_1ECOD (1.6)
CMR_MLE_Ne3q4dC1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Enolase N-terminal domain-like (From Topology)T: Enolase N-terminal domain-likeF: MR_MLE_NECOD (1.6)
CMR_MLE_C_1e3q4dC2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: MR_MLE_C_1ECOD (1.6)
DMR_MLE_Ne3q4dD1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Enolase N-terminal domain-like (From Topology)T: Enolase N-terminal domain-likeF: MR_MLE_NECOD (1.6)
DMR_MLE_C_1e3q4dD2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: MR_MLE_C_1ECOD (1.6)
EMR_MLE_Ne3q4dE1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Enolase N-terminal domain-like (From Topology)T: Enolase N-terminal domain-likeF: MR_MLE_NECOD (1.6)
EMR_MLE_C_1e3q4dE2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: MR_MLE_C_1ECOD (1.6)
FMR_MLE_Ne3q4dF1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Enolase N-terminal domain-like (From Topology)T: Enolase N-terminal domain-likeF: MR_MLE_NECOD (1.6)
FMR_MLE_C_1e3q4dF2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: MR_MLE_C_1ECOD (1.6)
GMR_MLE_Ne3q4dG1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Enolase N-terminal domain-like (From Topology)T: Enolase N-terminal domain-likeF: MR_MLE_NECOD (1.6)
GMR_MLE_C_1e3q4dG2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: MR_MLE_C_1ECOD (1.6)
HMR_MLE_Ne3q4dH1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Enolase N-terminal domain-like (From Topology)T: Enolase N-terminal domain-likeF: MR_MLE_NECOD (1.6)
HMR_MLE_C_1e3q4dH2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: MR_MLE_C_1ECOD (1.6)
IMR_MLE_Ne3q4dI1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Enolase N-terminal domain-like (From Topology)T: Enolase N-terminal domain-likeF: MR_MLE_NECOD (1.6)
IMR_MLE_C_1e3q4dI2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: MR_MLE_C_1ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.30.390.10 Alpha Beta 2-Layer Sandwich Enolase-like domain 1CATH (4.3.0)
A3.20.20.120 Alpha Beta Alpha-Beta Barrel TIM Barrel Enolase-like C-terminal domainCATH (4.3.0)
B3.30.390.10 Alpha Beta 2-Layer Sandwich Enolase-like domain 1CATH (4.3.0)
B3.20.20.120 Alpha Beta Alpha-Beta Barrel TIM Barrel Enolase-like C-terminal domainCATH (4.3.0)
C3.30.390.10 Alpha Beta 2-Layer Sandwich Enolase-like domain 1CATH (4.3.0)
C3.20.20.120 Alpha Beta Alpha-Beta Barrel TIM Barrel Enolase-like C-terminal domainCATH (4.3.0)
D3.30.390.10 Alpha Beta 2-Layer Sandwich Enolase-like domain 1CATH (4.3.0)
D3.20.20.120 Alpha Beta Alpha-Beta Barrel TIM Barrel Enolase-like C-terminal domainCATH (4.3.0)
E3.30.390.10 Alpha Beta 2-Layer Sandwich Enolase-like domain 1CATH (4.3.0)
E3.20.20.120 Alpha Beta Alpha-Beta Barrel TIM Barrel Enolase-like C-terminal domainCATH (4.3.0)
F3.30.390.10 Alpha Beta 2-Layer Sandwich Enolase-like domain 1CATH (4.3.0)
F3.20.20.120 Alpha Beta Alpha-Beta Barrel TIM Barrel Enolase-like C-terminal domainCATH (4.3.0)
G3.30.390.10 Alpha Beta 2-Layer Sandwich Enolase-like domain 1CATH (4.3.0)
G3.20.20.120 Alpha Beta Alpha-Beta Barrel TIM Barrel Enolase-like C-terminal domainCATH (4.3.0)
H3.30.390.10 Alpha Beta 2-Layer Sandwich Enolase-like domain 1CATH (4.3.0)
H3.20.20.120 Alpha Beta Alpha-Beta Barrel TIM Barrel Enolase-like C-terminal domainCATH (4.3.0)
I3.30.390.10 Alpha Beta 2-Layer Sandwich Enolase-like domain 1CATH (4.3.0)
I3.20.20.120 Alpha Beta Alpha-Beta Barrel TIM Barrel Enolase-like C-terminal domainCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D, E
PF02746Mandelate racemase / muconate lactonizing enzyme, N-terminal domain (MR_MLE_N)Mandelate racemase / muconate lactonizing enzyme, N-terminal domainSCOP reports fold similarity with enolase N-terminal domain.Domain
A, B, C, D, E
PF13378Enolase C-terminal domain-like (MR_MLE_C)Enolase C-terminal domain-likeThis domain appears at the C-terminus of many of the proteins that carry the MR_MLE_N Pfam:PF02746 domain. EC:4.2.1.40.Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D, E
Mandelate racemase/muconate lactonizing enzyme family; possible chloromuconate cycloisomerase -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR029065Enolase C-terminal domain-likeDomain
A, B, C, D, E
IPR013341Mandelate racemase/muconate lactonizing enzyme, N-terminal domainDomain
A, B, C, D, E
IPR034603Dipeptide epimeraseFamily
A, B, C, D, E
IPR013342Mandelate racemase/muconate lactonizing enzyme, C-terminalDomain
A, B, C, D, E
IPR029017Enolase-like, N-terminalHomologous Superfamily
A, B, C, D, E
IPR036849Enolase-like, C-terminal domain superfamilyHomologous Superfamily