3QI0 | pdb_00003qi0

Structural, thermodynamic and kinetic analysis of the picomolar binding affinity interaction of the beta-lactamase inhibitor protein-II (BLIP-II) with class A beta-lactamases

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d3qi0a_	All beta proteins	7-bladed beta-propeller	RCC1/BLIP-II	beta-lactamase inhibitor protein-II, BLIP-II	automated matches	Streptomyces hydrogenans (Streptomyces exfoliatus ) [TaxId: 1905 ],	SCOPe (2.08)
B	d3qi0b_	All beta proteins	7-bladed beta-propeller	RCC1/BLIP-II	beta-lactamase inhibitor protein-II, BLIP-II	automated matches	Streptomyces hydrogenans (Streptomyces exfoliatus ) [TaxId: 1905 ],	SCOPe (2.08)
C	d3qi0c_	All beta proteins	7-bladed beta-propeller	RCC1/BLIP-II	beta-lactamase inhibitor protein-II, BLIP-II	automated matches	Streptomyces hydrogenans (Streptomyces exfoliatus ) [TaxId: 1905 ],	SCOPe (2.08)
D	d3qi0d_	All beta proteins	7-bladed beta-propeller	RCC1/BLIP-II	beta-lactamase inhibitor protein-II, BLIP-II	automated matches	Streptomyces hydrogenans (Streptomyces exfoliatus ) [TaxId: 1905 ],	SCOPe (2.08)
E	d3qi0e_	All beta proteins	7-bladed beta-propeller	RCC1/BLIP-II	beta-lactamase inhibitor protein-II, BLIP-II	automated matches	Streptomyces hydrogenans (Streptomyces exfoliatus ) [TaxId: 1905 ],	SCOPe (2.08)
F	d3qi0f_	All beta proteins	7-bladed beta-propeller	RCC1/BLIP-II	beta-lactamase inhibitor protein-II, BLIP-II	automated matches	Streptomyces hydrogenans (Streptomyces exfoliatus ) [TaxId: 1905 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	RCC1/BLIP-II	8037361	3001704	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	RCC1/BLIP-II	8037361	3001704	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	RCC1/BLIP-II	8037361	3001704	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	RCC1/BLIP-II	8037361	3001704	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	RCC1/BLIP-II	8037361	3001704	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	RCC1/BLIP-II	8037361	3001704	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	zf-rbx1	e3qi0A1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: zf-rbx1	ECOD (v294.1)
B	zf-rbx1	e3qi0B1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: zf-rbx1	ECOD (v294.1)
C	zf-rbx1	e3qi0C1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: zf-rbx1	ECOD (v294.1)
D	zf-rbx1	e3qi0D1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: zf-rbx1	ECOD (v294.1)
E	zf-rbx1	e3qi0E1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: zf-rbx1	ECOD (v294.1)
F	zf-rbx1	e3qi0F1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: zf-rbx1	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.130.10.30	Mainly Beta	7 Propeller	Methylamine Dehydrogenase	Chain H	CATH (4.3.0)
B	2.130.10.30	Mainly Beta	7 Propeller	Methylamine Dehydrogenase	Chain H	CATH (4.3.0)
C	2.130.10.30	Mainly Beta	7 Propeller	Methylamine Dehydrogenase	Chain H	CATH (4.3.0)
D	2.130.10.30	Mainly Beta	7 Propeller	Methylamine Dehydrogenase	Chain H	CATH (4.3.0)
E	2.130.10.30	Mainly Beta	7 Propeller	Methylamine Dehydrogenase	Chain H	CATH (4.3.0)
F	2.130.10.30	Mainly Beta	7 Propeller	Methylamine Dehydrogenase	Chain H	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	Beta-lactamase inhibitory protein II	aminoacyltransferase activity ubiquitin-like protein transferase activity catalytic activity, acting on a protein acyltransferase activity ubiquitin-like protein ligase activity ubiquitin protein ligase activity transferase activity catalytic activity ubiquitin-protein transferase activity cation binding ion binding binding metal ion binding small molecule binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR051709	Ubiquitin ligases and GTPase regulators	Family
A, B, C, D, E A, B, C, D, E, F	IPR000408	Regulator of chromosome condensation, RCC1	Repeat
A, B, C, D, E A, B, C, D, E, F	IPR009091	Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.