3RCC | pdb_00003rcc

Crystal Structure of the Streptococcus agalactiae Sortase A

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
R	SCOP2B Superfamily	Sortase	8089168	3000481	SCOP2B (2022-06-29)
Q	SCOP2B Superfamily	Sortase	8089168	3000481	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	Sortase	8089168	3000481	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	Sortase	8089168	3000481	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	Sortase	8089168	3000481	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	Sortase	8089168	3000481	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Sortase	8089168	3000481	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Sortase	8089168	3000481	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Sortase	8089168	3000481	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Sortase	8089168	3000481	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Sortase	8089168	3000481	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Sortase	8089168	3000481	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Sortase	8089168	3000481	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Sortase	8089168	3000481	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Sortase	8089168	3000481	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Sortase	8089168	3000481	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Sortase	8089168	3000481	SCOP2B (2022-06-29)
A	SCOP2 Family	Sortase	8089167	4003242	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Sortase	8089168	3000481	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
R	TAL_FSA	e3rccR1	A: alpha bundles	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: TAL_FSA	ECOD (develop294)
Q	TAL_FSA	e3rccQ1	A: alpha bundles	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: TAL_FSA	ECOD (develop294)
P	TAL_FSA	e3rccP1	A: alpha bundles	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: TAL_FSA	ECOD (develop294)
O	TAL_FSA	e3rccO1	A: alpha bundles	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: TAL_FSA	ECOD (develop294)
N	TAL_FSA	e3rccN1	A: alpha bundles	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: TAL_FSA	ECOD (develop294)
M	TAL_FSA	e3rccM1	A: alpha bundles	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: TAL_FSA	ECOD (develop294)
L	TAL_FSA	e3rccL1	A: alpha bundles	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: TAL_FSA	ECOD (develop294)
K	TAL_FSA	e3rccK1	A: alpha bundles	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: TAL_FSA	ECOD (develop294)
J	TAL_FSA	e3rccJ1	A: alpha bundles	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: TAL_FSA	ECOD (develop294)
I	TAL_FSA	e3rccI1	A: alpha bundles	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: TAL_FSA	ECOD (develop294)
H	TAL_FSA	e3rccH1	A: alpha bundles	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: TAL_FSA	ECOD (develop294)
G	TAL_FSA	e3rccG1	A: alpha bundles	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: TAL_FSA	ECOD (develop294)
F	TAL_FSA	e3rccF1	A: alpha bundles	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: TAL_FSA	ECOD (develop294)
E	TAL_FSA	e3rccE1	A: alpha bundles	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: TAL_FSA	ECOD (develop294)
D	TAL_FSA	e3rccD1	A: alpha bundles	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: TAL_FSA	ECOD (develop294)
C	TAL_FSA	e3rccC1	A: alpha bundles	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: TAL_FSA	ECOD (develop294)
B	TAL_FSA	e3rccB1	A: alpha bundles	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: TAL_FSA	ECOD (develop294)
A	Oxidored_FMN	e3rccA1	A: alpha bundles	X: Hormone receptor domain (HRM, Pfam 02793)	H: Hormone receptor domain (HRM, Pfam 02793)	T: Hormone receptor domain (HRM, Pfam 02793)	F: Oxidored_FMN	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
R	2.40.260.10	Mainly Beta	Beta Barrel	Sortase	Chain: A	CATH (4.3.0)
Q	2.40.260.10	Mainly Beta	Beta Barrel	Sortase	Chain: A	CATH (4.3.0)
P	2.40.260.10	Mainly Beta	Beta Barrel	Sortase	Chain: A	CATH (4.3.0)
O	2.40.260.10	Mainly Beta	Beta Barrel	Sortase	Chain: A	CATH (4.3.0)
N	2.40.260.10	Mainly Beta	Beta Barrel	Sortase	Chain: A	CATH (4.3.0)
M	2.40.260.10	Mainly Beta	Beta Barrel	Sortase	Chain: A	CATH (4.3.0)
L	2.40.260.10	Mainly Beta	Beta Barrel	Sortase	Chain: A	CATH (4.3.0)
K	2.40.260.10	Mainly Beta	Beta Barrel	Sortase	Chain: A	CATH (4.3.0)
J	2.40.260.10	Mainly Beta	Beta Barrel	Sortase	Chain: A	CATH (4.3.0)
I	2.40.260.10	Mainly Beta	Beta Barrel	Sortase	Chain: A	CATH (4.3.0)
H	2.40.260.10	Mainly Beta	Beta Barrel	Sortase	Chain: A	CATH (4.3.0)
G	2.40.260.10	Mainly Beta	Beta Barrel	Sortase	Chain: A	CATH (4.3.0)
F	2.40.260.10	Mainly Beta	Beta Barrel	Sortase	Chain: A	CATH (4.3.0)
E	2.40.260.10	Mainly Beta	Beta Barrel	Sortase	Chain: A	CATH (4.3.0)
D	2.40.260.10	Mainly Beta	Beta Barrel	Sortase	Chain: A	CATH (4.3.0)
C	2.40.260.10	Mainly Beta	Beta Barrel	Sortase	Chain: A	CATH (4.3.0)
B	2.40.260.10	Mainly Beta	Beta Barrel	Sortase	Chain: A	CATH (4.3.0)
A	2.40.260.10	Mainly Beta	Beta Barrel	Sortase	Chain: A	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R	PF04203	Sortase domain (Sortase)	Sortase domain	The founder member of this family is S. aureus sortase, a transpeptidase that attaches surface proteins by the threonine of an LPXTG motif to the cell wall [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R	Sortase SrtA	cysteine-type peptidase activity peptidase activity catalytic activity, acting on a protein hydrolase activity catalytic activity cation binding ion binding binding metal ion binding small molecule binding	proteolysis metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R	IPR023365	Sortase domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R	IPR042007	Sortase A	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R	IPR005754	Sortase family	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.