Annotations: 3RYW

Crystal structure of P. vivax geranylgeranyl diphosphate synthase complexed with BPH-811

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	Terpenoid synthases	8097124	3001615	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Terpenoid synthases	8097124	3001615	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Terpenoid synthases	8097124	3001615	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Terpenoid synthases	8097124	3001615	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	Peptidase_S11	e3rywD2	A: alpha arrays	X: Cysteine proteinases-like	H: SH3	T: SH3	F: Peptidase_S11	ECOD (v295)
C	Peptidase_S11	e3rywC2	A: alpha arrays	X: Cysteine proteinases-like	H: SH3	T: SH3	F: Peptidase_S11	ECOD (v295)
B	Pkinase, PK_Tyr_Ser-Thr	e3rywB1	A: alpha arrays	X: Cysteine proteinases-like	H: Cysteine proteinases	T: Cysteine proteinases	F: Pkinase, PK_Tyr_Ser-Thr	ECOD (v295)
A	Pribosyltran_N	e3rywA1	A: alpha arrays	X: P-loop domains-like	H: RIFT-related	T: FMN-binding split barrel 2	F: Pribosyltran_N	ECOD (v295)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	1.10.600.10	Mainly Alpha	Orthogonal Bundle	Farnesyl Diphosphate Synthase	Farnesyl Diphosphate Synthase	CATH (4.3.0)
C	1.10.600.10	Mainly Alpha	Orthogonal Bundle	Farnesyl Diphosphate Synthase	Farnesyl Diphosphate Synthase	CATH (4.3.0)
B	1.10.600.10	Mainly Alpha	Orthogonal Bundle	Farnesyl Diphosphate Synthase	Farnesyl Diphosphate Synthase	CATH (4.3.0)
A	1.10.600.10	Mainly Alpha	Orthogonal Bundle	Farnesyl Diphosphate Synthase	Farnesyl Diphosphate Synthase	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF00348	Polyprenyl synthetase (polyprenyl_synt)	Polyprenyl synthetase		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Farnesyl pyrophosphate synthase	prenyl diphosphate synthase activity (2E,6E)-farnesyl diphosphate synthase activity prenyltransferase activity transferase activity transferase activity, transferring alkyl or aryl (other than methyl) groups catalytic activity dimethylallyltranstransferase activity cation binding ion binding binding metal ion binding small molecule binding	isoprenoid biosynthetic process lipid biosynthetic process primary metabolic process terpenoid biosynthetic process phospholipid biosynthetic process farnesyl diphosphate metabolic process phospholipid metabolic process trans, trans-farnesyl diphosphate biosynthetic process biosynthetic process organophosphate metabolic process organophosphate biosynthetic process dimethylallyl diphosphate metabolic process metabolic process cellular process isoprenoid biosynthetic process lipid biosynthetic process primary metabolic process terpenoid biosynthetic process phospholipid biosynthetic process farnesyl diphosphate metabolic process phospholipid metabolic process trans, trans-farnesyl diphosphate biosynthetic process biosynthetic process organophosphate metabolic process organophosphate biosynthetic process dimethylallyl diphosphate metabolic process metabolic process cellular process phosphorus metabolic process terpenoid metabolic process lipid metabolic process isoprenoid metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR039702	Farnesyl pyrophosphate synthase-like	Family
A, B, C, D	IPR008949	Isoprenoid synthase domain superfamily	Homologous Superfamily
A, B, C, D	IPR033749	Polyprenyl synthetase, conserved site	Conserved Site
A, B, C, D	IPR000092	Polyprenyl synthetase-like	Family

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