The Development of Peptide-based Tools for the Analysis of Angiogenesis
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| D [auth W] | d3s1kw_ | Small proteins | Cystine-knot cytokines | Cystine-knot cytokines | Platelet-derived growth factor-like | automated matches | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| D [auth W] | e3s1kW1 | A: Alpha-beta plaits | X: Phage tail protein-like | H: Transmembrane protein 14A | T: FeoB_Cyto | F: | ECOD (20:10:01) | |
| C [auth V] | e3s1kV1 | A: Alpha-beta plaits | X: Phage tail protein-like | H: Transmembrane protein 14A | T: FeoB_Cyto | F: | ECOD (20:10:01) | |
| B | e3s1kB1 | A: Alpha-beta plaits | X: Phage tail protein-like | H: Transmembrane protein 14A | T: FeoB_Cyto | F: | ECOD (20:10:01) | |
| A | e3s1kA1 | A: Hormone receptor domain (HRM, Pfam 02793) | X: Hormone receptor domain (HRM, Pfam 02793) | H: Hormone receptor domain (HRM, Pfam 02793) | T: LPMO_10 | F: | ECOD (20:10:01) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| D [auth W] | 2.10.90.10 | Mainly Beta | Ribbon | Cystine Knot Cytokines, subunit B | Cystine-knot cytokines | CATH (4.3.0) |
| C [auth V] | 2.10.90.10 | Mainly Beta | Ribbon | Cystine Knot Cytokines, subunit B | Cystine-knot cytokines | CATH (4.3.0) |
| B | 1.20.5.420 | Mainly Alpha | Up-down Bundle | Single alpha-helices involved in coiled-coils or other helix-helix interfaces | Immunoglobulin FC, subunit C | CATH (4.3.0) |
| A | 1.20.5.420 | Mainly Alpha | Up-down Bundle | Single alpha-helices involved in coiled-coils or other helix-helix interfaces | Immunoglobulin FC, subunit C | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| C [auth V], D [auth W] | PF00341 | PDGF/VEGF domain (PDGF) | PDGF/VEGF domain | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| C [auth V], D [auth W] | IPR029034 | Cystine-knot cytokine | Homologous Superfamily |
| C [auth V], D [auth W] | IPR036841 | Vascular endothelial growth factor, heparin-binding domain superfamily | Homologous Superfamily |
| C [auth V], D [auth W] | IPR023581 | Platelet-derived growth factor, conserved site | Conserved Site |
| C [auth V], D [auth W] | IPR000072 | PDGF/VEGF domain | Domain |
| C [auth V], D [auth W] | IPR027928 | Vascular endothelial growth factor, heparin-binding domain | Domain |
| C [auth V], D [auth W] | IPR050507 | Platelet-derived/Vascular endothelial growth factor | Family |














