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 3SQI | pdb_00003sqi

DNA binding domain of Ndc10

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2 FamilyNdc10, DNA-binding domain-like 8046151 4004910 SCOP2 (2022-06-29)
ASCOP2 FamilyNdc10, N-terminal domain-like 8053772 4007620 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyDNA breaking-rejoining enzymes 8053767 3001127 SCOP2 (2022-06-29)
ASCOP2 Superfamilylambda integrase clamp domain-like 8053776 3000550 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AN6_Mtasee3sqiA1 A: alpha arraysX: Four-helical up-and-down bundleH: N-terminal helical domain in restriction-modification system methylation subunitT: N-terminal helical domain in restriction-modification system methylation subunitF: N6_MtaseECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A1.10.150.540 Mainly Alpha Orthogonal Bundle DNA polymerase domain 1CATH (4.3.0)
A1.10.443.20 Mainly Alpha Orthogonal Bundle hpI Integrase Chain ACATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF16787Centromere DNA-binding protein complex CBF3 subunit, domain 2 (NDC10_II)Centromere DNA-binding protein complex CBF3 subunit, domain 2NDC10_II is a the second of five domains on the Kluyveromyces lactis Ndc10 protein. Each subunit of the Ndc10 dimer binds a separate fragment of DNA, suggesting that Ndc10 stabilises a DNA loop at the centromere [1]. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
DNA (5'-D(P*AP*AP*AP*TP*TP*TP*TP*AP*TP*AP*AP*AP*TP*TP*A)-3')---
DNA (5'-D(P*TP*TP*AP*AP*TP*TP*TP*AP*TP*AP*AP*AP*AP*TP*T)-3')---
KLLA0E03807p - -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR038279Ndc10, domain 2 superfamilyHomologous Superfamily
IPR031872Ndc10, domain 2Domain
IPR022210Transcription activator GCR1-like domainDomain