Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
CSCOP2B Superfamilya domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 8042105 3000966 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyTransmembrane di-heme cytochromes 8042108 3000517 SCOP2B (2022-06-29)
M [auth P]SCOP2B Superfamilya domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 8042105 3000966 SCOP2B (2022-06-29)
M [auth P]SCOP2B SuperfamilyTransmembrane di-heme cytochromes 8042108 3000517 SCOP2B (2022-06-29)
FSCOP2B Superfamily14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 8068577 3000797 SCOP2B (2022-06-29)
P [auth S]SCOP2B Superfamily14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 8068577 3000797 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyUbiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 8073735 3000770 SCOP2B (2022-06-29)
Q [auth T]SCOP2B SuperfamilyUbiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 8073735 3000770 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyNon-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 8068575 3000806 SCOP2B (2022-06-29)
R [auth U]SCOP2B SuperfamilyNon-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 8068575 3000806 SCOP2B (2022-06-29)
JSCOP2B SuperfamilySubunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 8068589 3000779 SCOP2B (2022-06-29)
T [auth W]SCOP2B SuperfamilySubunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 8068589 3000779 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AAnemone_cytotoxe3tguA1 A: alpha bundlesX: Flavodoxin-likeH: SH3T: SH3F: Anemone_cytotoxECOD (develop294)
K [auth N]Rrf2e3tguN1 A: alpha bundlesX: beta-GraspH: HTHT: winged helix domainF: Rrf2ECOD (develop294)
BAnemone_cytotoxe3tguB1 A: alpha bundlesX: Flavodoxin-likeH: SH3T: SH3F: Anemone_cytotoxECOD (develop294)
L [auth O]PI3_PI4_kinasee3tguO1 A: alpha bundlesX: Transmembrane heme-binding four-helical bundleH: Anticodon-binding domain of Class II aaRST: Anticodon-binding domain of Class II aaRSF: PI3_PI4_kinaseECOD (develop294)
CAnemone_cytotoxe3tguC1 A: alpha bundlesX: Flavodoxin-likeH: SH3T: SH3F: Anemone_cytotoxECOD (develop294)
M [auth P]Rrf2e3tguP1 A: alpha bundlesX: beta-GraspH: HTHT: winged helix domainF: Rrf2ECOD (develop294)
DAnemone_cytotoxe3tguD1 A: alpha bundlesX: Flavodoxin-likeH: SH3T: SH3F: Anemone_cytotoxECOD (develop294)
N [auth Q]Rrf2e3tguQ1 A: alpha bundlesX: beta-GraspH: HTHT: winged helix domainF: Rrf2ECOD (develop294)
ESBP_bac_1e3tguE2 A: alpha bundlesX: amino-terminal domain of OmpATbH: amino-terminal domain of OmpATbT: amino-terminal domain of OmpATbF: SBP_bac_1ECOD (develop294)
ERad60-SLDe3tguE3 A: alpha bundlesX: TIM beta/alpha-barrelH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Rad60-SLDECOD (develop294)
O [auth R]SBP_bac_1e3tguR2 A: alpha bundlesX: amino-terminal domain of OmpATbH: amino-terminal domain of OmpATbT: amino-terminal domain of OmpATbF: SBP_bac_1ECOD (develop294)
O [auth R]Rad60-SLDe3tguR3 A: alpha bundlesX: TIM beta/alpha-barrelH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Rad60-SLDECOD (develop294)
FAnemone_cytotoxe3tguF1 A: alpha bundlesX: Flavodoxin-likeH: SH3T: SH3F: Anemone_cytotoxECOD (develop294)
P [auth S]Cathelicidinse3tguS1 A: alpha bundlesX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: CathelicidinsECOD (develop294)
Ge3tguG2 A: alpha bundlesX: DEATH domainH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF:ECOD (develop294)
Q [auth T]e3tguT2 A: alpha bundlesX: DEATH domainH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF:ECOD (develop294)
HAnemone_cytotoxe3tguH1 A: alpha bundlesX: Flavodoxin-likeH: SH3T: SH3F: Anemone_cytotoxECOD (develop294)
R [auth U]FtsJe3tguU1 A: alpha bundlesX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: FtsJECOD (develop294)
Izf-MYNDe3tguI1 A: alpha bundlesX: jelly-rollH: Double-stranded beta-helixT: Double-stranded beta-helixF: zf-MYNDECOD (develop294)
S [auth V]DNA_topoisoIVe3tguV1 A: alpha bundlesX: Rossmann-likeH: Glycosyl hydrolase domainT: Glycosyl hydrolase domainF: DNA_topoisoIVECOD (develop294)
JAnemone_cytotoxe3tguJ1 A: alpha bundlesX: Flavodoxin-likeH: SH3T: SH3F: Anemone_cytotoxECOD (develop294)
T [auth W]FtsJe3tguW1 A: alpha bundlesX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: FtsJECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.30.830.10 Alpha Beta 2-Layer Sandwich Cytochrome Bc1 Complex Chain A, domain 1CATH (4.3.0)
K [auth N]3.30.830.10 Alpha Beta 2-Layer Sandwich Cytochrome Bc1 Complex Chain A, domain 1CATH (4.3.0)
B3.30.830.10 Alpha Beta 2-Layer Sandwich Cytochrome Bc1 Complex Chain A, domain 1CATH (4.3.0)
L [auth O]3.30.830.10 Alpha Beta 2-Layer Sandwich Cytochrome Bc1 Complex Chain A, domain 1CATH (4.3.0)
C1.20.810.10 Mainly Alpha Up-down Bundle Cytochrome Bc1 Complex Chain CCATH (4.3.0)
M [auth P]1.20.810.10 Mainly Alpha Up-down Bundle Cytochrome Bc1 Complex Chain CCATH (4.3.0)
D1.10.760.10 Mainly Alpha Orthogonal Bundle Cytochrome Bc1 Complex Chain D, domain 2CATH (4.3.0)
D1.20.5.100 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces Cytochrome c1, transmembrane anchor, C-terminalCATH (4.3.0)
N [auth Q]1.10.760.10 Mainly Alpha Orthogonal Bundle Cytochrome Bc1 Complex Chain D, domain 2CATH (4.3.0)
N [auth Q]1.20.5.100 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces Cytochrome c1, transmembrane anchor, C-terminalCATH (4.3.0)
E1.20.5.270 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces Ubiquinol cytochrome reductase, transmembrane domainCATH (4.3.0)
E2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domainCATH (4.3.0)
O [auth R]1.20.5.270 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces Ubiquinol cytochrome reductase, transmembrane domainCATH (4.3.0)
O [auth R]2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domainCATH (4.3.0)
F1.10.1090.10 Mainly Alpha Orthogonal Bundle Cytochrome Bc1 Complex Chain FCATH (4.3.0)
P [auth S]1.10.1090.10 Mainly Alpha Orthogonal Bundle Cytochrome Bc1 Complex Chain FCATH (4.3.0)
G1.20.5.210 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces Cytochrome b-c1 complex subunit 8CATH (4.3.0)
Q [auth T]1.20.5.210 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces Cytochrome b-c1 complex subunit 8CATH (4.3.0)
H1.10.287.20 Mainly Alpha Orthogonal Bundle Helix Hairpins Ubiquinol-cytochrome C reductase hinge domainCATH (4.3.0)
R [auth U]1.10.287.20 Mainly Alpha Orthogonal Bundle Helix Hairpins Ubiquinol-cytochrome C reductase hinge domainCATH (4.3.0)
I2.10.210.10 Mainly Beta Ribbon Cytochrome Bc1 Complex Chain ICATH (4.3.0)
S [auth V]2.10.210.10 Mainly Beta Ribbon Cytochrome Bc1 Complex Chain ICATH (4.3.0)
J1.20.5.260 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces Cytochrome b-c1 complex subunit 9CATH (4.3.0)
T [auth W]1.20.5.260 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces Cytochrome b-c1 complex subunit 9CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
C,
M [auth P]
PF00032Cytochrome b(C-terminal)/b6/petD (Cytochrom_B_C)Cytochrome b(C-terminal)/b6/petDDomain
C,
M [auth P]
PF00033Cytochrome b/b6/petB (Cytochrome_B)Cytochrome b/b6/petBDomain
E,
O [auth R]
PF02921Ubiquinol cytochrome reductase transmembrane region (UCR_TM)Ubiquinol cytochrome reductase transmembrane region- Family
E,
O [auth R]
PF00355Rieske [2Fe-2S] domain (Rieske)Rieske [2Fe-2S] domainThe rieske domain has a [2Fe-2S] centre. Two conserved cysteines coordinate one Fe ion, while the other Fe ion is coordinated by two conserved histidines. In hyperthermophilic archaea there is a SKTPCX(2-3)C motif at the C-terminus. The cysteines in ...The rieske domain has a [2Fe-2S] centre. Two conserved cysteines coordinate one Fe ion, while the other Fe ion is coordinated by two conserved histidines. In hyperthermophilic archaea there is a SKTPCX(2-3)C motif at the C-terminus. The cysteines in this motif form a disulphide bridge, which stabilises the protein [4].
Domain
I,
S [auth V]
PF09165Ubiquinol-cytochrome c reductase 8 kDa, N-terminal (Ubiq-Cytc-red_N)Ubiquinol-cytochrome c reductase 8 kDa, N-terminalMembers of this family adopt a structure consisting of many antiparallel beta sheets, with few alpha helices, in a non-globular arrangement. They are required for proper functioning of the respiratory chain [1]. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A,
K [auth N]
Mitochondrial ubiquinol-cytochrome-c reductase complex core protein i -
B,
L [auth O]
Mitochondrial ubiquinol-cytochrome-c reductase complex core protein 2 -
C,
M [auth P]
Cytochrome b
D,
N [auth Q]
Mitochondrial cytochrome c1, heme protein -
E,
O [auth R]
Cytochrome b-c1 complex subunit Rieske, mitochondrial
F,
P [auth S]
Mitochondrial ubiquinol-cytochrome c reductase 14 kda protein-
G,
Q [auth T]
Mitochondrial ubiquinol-cytochrome c reductase ubiquinone-binding protein qp-c-
H,
R [auth U]
Mitochondrial ubiquinol-cytochrome c reductase 11 kda protein, complex iii subunit viii-
I,
S [auth V]
Cytochrome b-c1 complex subunit Rieske, mitochondrial
J,
T [auth W]
Mitochondrial ubiquinol-cytochrome c reductase 7.2 kda protein-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A,
K [auth N]
IPR007863Peptidase M16, C-terminalDomain
A,
K [auth N]
IPR011765Peptidase M16, N-terminalDomain
A,
K [auth N]
IPR011249Metalloenzyme, LuxS/M16 peptidase-likeHomologous Superfamily
A,
K [auth N]
IPR050361Mitochondrial Processing Peptidase/Ubiquinol-cytochrome c Reductase ComplexFamily
B,
L [auth O]
IPR007863Peptidase M16, C-terminalDomain
B,
L [auth O]
IPR011765Peptidase M16, N-terminalDomain
B,
L [auth O]
IPR011249Metalloenzyme, LuxS/M16 peptidase-likeHomologous Superfamily
B,
L [auth O]
IPR050361Mitochondrial Processing Peptidase/Ubiquinol-cytochrome c Reductase ComplexFamily
C,
M [auth P]
IPR036150Cytochrome b/b6, C-terminal domain superfamilyHomologous Superfamily
C,
M [auth P]
IPR027387Cytochrome b/b6-like domain superfamilyHomologous Superfamily
C,
M [auth P]
IPR048260Cytochrome b/b6, C-terminal domain, eukaryotic/bacterialDomain
C,
M [auth P]
IPR016174Di-haem cytochrome, transmembraneHomologous Superfamily
C,
M [auth P]
IPR005798Cytochrome b/b6, C-terminalDomain
C,
M [auth P]
IPR048259Cytochrome b/b6, N-terminal domain, eukaryotic/bacterialDomain
C,
M [auth P]
IPR030689Cytochrome bFamily
C,
M [auth P]
IPR005797Cytochrome b/b6, N-terminal domainDomain
D,
N [auth Q]
IPR036909Cytochrome c-like domain superfamilyHomologous Superfamily
D,
N [auth Q]
IPR002326Cytochrome c1Family
D,
N [auth Q]
IPR009056Cytochrome c-like domainDomain
D,
N [auth Q]
IPR021157Cytochrome c1, transmembrane anchor, C-terminalHomologous Superfamily
E,
O [auth R]
IPR036922Rieske [2Fe-2S] iron-sulphur domain superfamilyHomologous Superfamily
E,
O [auth R]
IPR014349Rieske iron-sulphur proteinFamily
E,
O [auth R]
IPR011070Globular protein, non-globular alpha/beta subunitHomologous Superfamily
E,
O [auth R]
IPR004192Cytochrome b-c1 complex subunit Rieske, transmembrane domainDomain
E,
O [auth R]
IPR015248Ubiquinol-cytochrome c reductase iron-sulphur subunit, N-terminalDomain
E,
O [auth R]
IPR017941Rieske [2Fe-2S] iron-sulphur domainDomain
E,
O [auth R]
IPR005805Rieske iron-sulphur protein, C-terminalDomain
E,
O [auth R]
IPR037008Cytochrome bc1 complex subunit Rieske, transmembrane domain superfamilyHomologous Superfamily
E,
O [auth R]
IPR006317Ubiquinol-cytochrome c reductase, iron-sulphur subunitDomain
F,
P [auth S]
IPR003197Cytochrome b-c1 complex subunit 7Family
F,
P [auth S]
IPR036544Cytochrome b-c1 complex subunit 7 superfamilyHomologous Superfamily
G,
Q [auth T]
IPR004205Cytochrome b-c1 complex subunit 8Family
G,
Q [auth T]
IPR036642Cytochrome b-c1 complex subunit 8 superfamilyHomologous Superfamily
H,
R [auth U]
IPR003422Cytochrome b-c1 complex, subunit 6Family
H,
R [auth U]
IPR023184Ubiquinol-cytochrome C reductase hinge domainDomain
H,
R [auth U]
IPR036811Ubiquinol-cytochrome C reductase hinge domain superfamilyHomologous Superfamily
I,
S [auth V]
IPR036922Rieske [2Fe-2S] iron-sulphur domain superfamilyHomologous Superfamily
I,
S [auth V]
IPR014349Rieske iron-sulphur proteinFamily
I,
S [auth V]
IPR011070Globular protein, non-globular alpha/beta subunitHomologous Superfamily
I,
S [auth V]
IPR004192Cytochrome b-c1 complex subunit Rieske, transmembrane domainDomain
I,
S [auth V]
IPR015248Ubiquinol-cytochrome c reductase iron-sulphur subunit, N-terminalDomain
I,
S [auth V]
IPR017941Rieske [2Fe-2S] iron-sulphur domainDomain
I,
S [auth V]
IPR005805Rieske iron-sulphur protein, C-terminalDomain
I,
S [auth V]
IPR037008Cytochrome bc1 complex subunit Rieske, transmembrane domain superfamilyHomologous Superfamily
I,
S [auth V]
IPR006317Ubiquinol-cytochrome c reductase, iron-sulphur subunitDomain
J,
T [auth W]
IPR008027Cytochrome b-c1 complex subunit 9Family
J,
T [auth W]
IPR036656Cytochrome b-c1 complex subunit 9 superfamilyHomologous Superfamily

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
C,
M [auth P]
FME Parent Component: MET

RESIDAA0021 , AA0566

PSI-MOD :  N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891
I,
S [auth V]
AME Parent Component: MET

RESIDAA0021 , AA0566

I,
S [auth V]
UNK RESIDAA0021 , AA0566