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 3U1B | pdb_00003u1b

Crystal structure of the S238R mutant of mycrocine immunity protein (MccF) with AMP

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BADAMTS_CR_2e3u1bB1 A: alpha arraysX: amino-terminal domain of OmpATbH: amino-terminal domain of OmpATbT: amino-terminal domain of OmpATbF: ADAMTS_CR_2ECOD (v295.2)
AADAMTS_CR_2e3u1bA1 A: alpha arraysX: amino-terminal domain of OmpATbH: amino-terminal domain of OmpATbT: amino-terminal domain of OmpATbF: ADAMTS_CR_2ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B3.40.50.10740 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Murein tetrapeptidase LD-carboxypeptidase, N-terminal domainCATH (4.3.0)
B3.50.30.60 Alpha Beta 3-Layer(bba) Sandwich Glucose Oxidase domain 1CATH (4.3.0)
A3.40.50.10740 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Murein tetrapeptidase LD-carboxypeptidase, N-terminal domainCATH (4.3.0)
A3.50.30.60 Alpha Beta 3-Layer(bba) Sandwich Glucose Oxidase domain 1CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF17676LD-carboxypeptidase C-terminal domain (Peptidase_S66C)LD-carboxypeptidase C-terminal domainMuramoyl-tetrapeptide carboxypeptidase hydrolyses a peptide bond between a di-basic amino acid and the C-terminal D-alanine in the tetrapeptide moiety in peptidoglycan. This cleaves the bond between an L- and a D-amino acid. The function of this acti ...Muramoyl-tetrapeptide carboxypeptidase hydrolyses a peptide bond between a di-basic amino acid and the C-terminal D-alanine in the tetrapeptide moiety in peptidoglycan. This cleaves the bond between an L- and a D-amino acid. The function of this activity is in murein recycling. This family also includes the microcin c7 self-immunity protein Swiss:Q47511. This family corresponds to Merops family S66.
Domain
A, B
PF02016LD-carboxypeptidase N-terminal domain (Peptidase_S66)LD-carboxypeptidase N-terminal domainMuramoyl-tetrapeptide carboxypeptidase hydrolyses a peptide bond between a di-basic amino acid and the C-terminal D-alanine in the tetrapeptide moiety in peptidoglycan. This cleaves the bond between an L- and a D-amino acid. The function of this acti ...Muramoyl-tetrapeptide carboxypeptidase hydrolyses a peptide bond between a di-basic amino acid and the C-terminal D-alanine in the tetrapeptide moiety in peptidoglycan. This cleaves the bond between an L- and a D-amino acid. The function of this activity is in murein recycling. This family also includes the microcin c7 self-immunity protein Swiss:Q47511. This family corresponds to Merops family S66.
Domain

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR029062Class I glutamine amidotransferase-likeHomologous Superfamily
A, B
IPR040921LD-carboxypeptidase, C-terminalDomain
A, B
IPR027461LD-carboxypeptidase A, C-terminal domain superfamilyHomologous Superfamily
A, B
IPR040449LD-carboxypeptidase, N-terminalDomain
A, B
IPR027478Murein tetrapeptide carboxypeptidase, N-terminalHomologous Superfamily
A, B
IPR003507Peptidase family S66Family