Crystal structure of extracellular region of human epidermal growth factor receptor 4 in complex with neuregulin-1 beta
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | d3u7ua1 | Alpha and beta proteins (a/b) | Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) | L domain-like | automated matches | automated matches | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
| A | d3u7ua2 | Small proteins | Knottins (small inhibitors, toxins, lectins) | Growth factor receptor domain | automated matches | automated matches | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | ATP-grasp_4 | e3u7uA4 | A: a/b three-layered sandwiches | X: Transmembrane heme-binding four-helical bundle | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: ATP-grasp_4 | ECOD (v294.1) |
| A | EPSP_synthase | e3u7uA1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: ARM repeat | T: ARM repeat | F: EPSP_synthase | ECOD (v294.1) |
| B | ATP-grasp_4 | e3u7uB4 | A: a/b three-layered sandwiches | X: Transmembrane heme-binding four-helical bundle | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: ATP-grasp_4 | ECOD (v294.1) |
| B | EPSP_synthase | e3u7uB1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: ARM repeat | T: ARM repeat | F: EPSP_synthase | ECOD (v294.1) |
| C | ATP-grasp_4 | e3u7uC1 | A: a/b three-layered sandwiches | X: Transmembrane heme-binding four-helical bundle | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: ATP-grasp_4 | ECOD (v294.1) |
| D | ATP-grasp_4 | e3u7uD4 | A: a/b three-layered sandwiches | X: Transmembrane heme-binding four-helical bundle | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: ATP-grasp_4 | ECOD (v294.1) |
| D | EPSP_synthase | e3u7uD2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: ARM repeat | T: ARM repeat | F: EPSP_synthase | ECOD (v294.1) |
| E | ATP-grasp_4 | e3u7uE4 | A: a/b three-layered sandwiches | X: Transmembrane heme-binding four-helical bundle | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: ATP-grasp_4 | ECOD (v294.1) |
| E | EPSP_synthase | e3u7uE2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: ARM repeat | T: ARM repeat | F: EPSP_synthase | ECOD (v294.1) |
| F | e3u7uF4 | A: a/b three-layered sandwiches | X: Transmembrane heme-binding four-helical bundle | H: Anticodon-binding domain of Class II aaRS | T: Anticodon-binding domain of Class II aaRS | F: | ECOD (v294.1) | |
| F | PI3K_rbd,PIK3CG_ABD | e3u7uF1 | A: a/b three-layered sandwiches | X: Transmembrane heme-binding four-helical bundle | H: Anticodon-binding domain of Class II aaRS | T: Anticodon-binding domain of Class II aaRS | F: PI3K_rbd,PIK3CG_ABD | ECOD (v294.1) |
| G | OSCP | e3u7uG1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: SH3 | T: SH3 | F: OSCP | ECOD (v294.1) |
| H | Ephrin_lbd | e3u7uH2 | A: a/b three-layered sandwiches | X: Subtilisin-like | H: Subtilisin-like | T: Subtilisin-like | F: Ephrin_lbd | ECOD (v294.1) |
| I | Ephrin_lbd | e3u7uI2 | A: a/b three-layered sandwiches | X: Subtilisin-like | H: Subtilisin-like | T: Subtilisin-like | F: Ephrin_lbd | ECOD (v294.1) |
| J | ABC_tran | e3u7uJ1 | A: a/b three-layered sandwiches | X: beta-Grasp | H: HTH | T: winged helix domain | F: ABC_tran | ECOD (v294.1) |
| K | Ephrin_lbd | e3u7uK2 | A: a/b three-layered sandwiches | X: Subtilisin-like | H: Subtilisin-like | T: Subtilisin-like | F: Ephrin_lbd | ECOD (v294.1) |
| L | Ephrin_lbd | e3u7uL2 | A: a/b three-layered sandwiches | X: Subtilisin-like | H: Subtilisin-like | T: Subtilisin-like | F: Ephrin_lbd | ECOD (v294.1) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF00757 | Furin-like cysteine rich region (Furin-like) | Furin-like cysteine rich region | Domain | ||
| PF01030 | Receptor L domain (Recep_L_domain) | Receptor L domain | - | Repeat | |
| PF14843 | Growth factor receptor domain IV (GF_recep_IV) | Growth factor receptor domain IV | This is the fourth extracellular domain of receptor tyrosine protein kinases. Interaction between this domain and the furin-like domain (Pfam:PF00757) regulates the binding of ligands to the receptor L domains (Pfam:PF01030) [1]. | Domain | |
| PF00008 | EGF-like domain (EGF) | EGF-like domain | There is no clear separation between noise and signal. Pfam:PF00053 is very similar, but has 8 instead of 6 conserved cysteines. Includes some cytokine receptors. The EGF domain misses the N-terminus regions of the Ca2+ binding EGF domains (this is t ... | Domain |














