3UGX | pdb_00003ugx

Crystal Structure of Visual Arrestin

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d3ugxd1	All beta proteins	Immunoglobulin-like beta-sandwich	E set domains	Arrestin/Vps26-like	automated matches	bovine (Bos taurus ) [TaxId: 9913 ],	SCOPe (2.08)
C	d3ugxc1	All beta proteins	Immunoglobulin-like beta-sandwich	E set domains	Arrestin/Vps26-like	automated matches	bovine (Bos taurus ) [TaxId: 9913 ],	SCOPe (2.08)
B	d3ugxb1	All beta proteins	Immunoglobulin-like beta-sandwich	E set domains	Arrestin/Vps26-like	automated matches	bovine (Bos taurus ) [TaxId: 9913 ],	SCOPe (2.08)
A	d3ugxa1	All beta proteins	Immunoglobulin-like beta-sandwich	E set domains	Arrestin/Vps26-like	automated matches	bovine (Bos taurus ) [TaxId: 9913 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	Arrestin/Vps26-like	8055049	3002071	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Arrestin/Vps26-like	8055049	3002071	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Arrestin/Vps26-like	8055049	3002071	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Arrestin/Vps26-like	8055049	3002071	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	VEGFR-1-like_Ig-like	e3ugxD3	A: a/b three-layered sandwiches	X: Fusion glycoprotein F2	H: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	T: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	F: VEGFR-1-like_Ig-like	ECOD (v294.1)
C	ABC_tran	e3ugxC1	A: a/b three-layered sandwiches	X: beta-Grasp	H: HTH	T: winged helix domain	F: ABC_tran	ECOD (v294.1)
B	Glycolytic	e3ugxB1	A: a/b three-layered sandwiches	X: YrdC/RibB	H: YrdC/RibB	T: YrdC/RibB	F: Glycolytic	ECOD (v294.1)
A	I-set	e3ugxA1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: I-set	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	2.60.40.840	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (4.3.0)
D	2.60.40.640	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (4.3.0)
C	2.60.40.840	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (4.3.0)
C	2.60.40.640	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (4.3.0)
B	2.60.40.840	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (4.3.0)
B	2.60.40.640	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (4.3.0)
A	2.60.40.840	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (4.3.0)
A	2.60.40.640	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF00339	Arrestin (or S-antigen), N-terminal domain (Arrestin_N)	Arrestin (or S-antigen), N-terminal domain	Ig-like beta-sandwich fold. Scop reports duplication with C-terminal domain.	Domain
A, B, C, D	PF02752	Arrestin (or S-antigen), C-terminal domain (Arrestin_C)	Arrestin (or S-antigen), C-terminal domain	Ig-like beta-sandwich fold. Scop reports duplication with N-terminal domain.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	S-arrestin	opsin binding protein binding binding phosphoprotein binding signaling receptor binding G protein-coupled receptor binding identical protein binding	response to light stimulus response to stimulus response to radiation response to abiotic stimulus multicellular organismal process system process sensory perception nervous system process cellular response to stimulus regulation of biological process regulation of cellular process signaling biological regulation cellular process response to light stimulus response to stimulus response to radiation response to abiotic stimulus multicellular organismal process system process sensory perception nervous system process cellular response to stimulus regulation of biological process regulation of cellular process signaling biological regulation cellular process signal transduction cell communication negative adaptation of signaling pathway import into cell receptor internalization negative regulation of signaling transport negative regulation of biological process desensitization of G protein-coupled receptor signaling pathway regulation of signal transduction negative regulation of G protein-coupled receptor signaling pathway negative regulation of cell communication vesicle-mediated transport localization negative regulation of cellular process regulation of G protein-coupled receptor signaling pathway G protein-coupled receptor internalization regulation of signaling negative regulation of response to stimulus negative regulation of signal transduction establishment of localization regulation of response to stimulus adaptation of signaling pathway regulation of cell communication G protein-coupled receptor signaling pathway receptor-mediated endocytosis endocytosis	cellular anatomical structure membrane photoreceptor inner segment intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle non-motile cilium 9+0 non-motile cilium cilium neuron projection photoreceptor outer segment plasma membrane bounded cell projection cell projection cellular anatomical structure membrane photoreceptor inner segment intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle non-motile cilium 9+0 non-motile cilium cilium neuron projection photoreceptor outer segment plasma membrane bounded cell projection cell projection photoreceptor cell cilium organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR011022	Arrestin-like, C-terminal domain	Domain
A, B, C, D	IPR017864	Arrestin, conserved site	Conserved Site
A, B, C, D	IPR000698	Arrestin	Family
A, B, C, D	IPR011021	Arrestin-like, N-terminal	Domain
A, B, C, D	IPR014753	Arrestin, N-terminal	Homologous Superfamily
A, B, C, D	IPR014756	Immunoglobulin E-set	Homologous Superfamily
A, B, C, D	IPR014752	Arrestin-like, C-terminal domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.