3UVA | pdb_00003uva

Crystal structure of L-rhamnose isomerase mutant W38F from Bacillus halodurans in complex with Mn

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d3uvad_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Xylose isomerase-like	L-rhamnose isomerase	automated matches	(Halalkalibacterium halodurans ) [TaxId: 86665 ],	SCOPe (2.08)
C	d3uvac_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Xylose isomerase-like	L-rhamnose isomerase	automated matches	(Halalkalibacterium halodurans ) [TaxId: 86665 ],	SCOPe (2.08)
B	d3uvab_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Xylose isomerase-like	L-rhamnose isomerase	automated matches	(Halalkalibacterium halodurans ) [TaxId: 86665 ],	SCOPe (2.08)
A	d3uvaa_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Xylose isomerase-like	L-rhamnose isomerase	automated matches	(Halalkalibacterium halodurans ) [TaxId: 86665 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	Xylose isomerase-like	8080028	3000560	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Xylose isomerase-like	8080028	3000560	SCOP2B (2022-06-29)
B	SCOP2 Family	L-rhamnose isomerase	8080027	4003297	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	Xylose isomerase-like	8080028	3000560	SCOP2 (2022-06-29)
A	SCOP2B Superfamily	Xylose isomerase-like	8080028	3000560	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	ERG4_ERG24	e3uvaD2	A: alpha bundles	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: N-terminal domain of Delta(14)-sterol reductase, MaSR1	F: ERG4_ERG24	ECOD (develop294)
C		e3uvaC1	A: alpha bundles	X: Globin-like	H: Flavoproteins/Phosphotyrosine protein phosphatases-like	T: (Phosphotyrosine protein) phosphatases II	F:	ECOD (develop294)
B	ERG4_ERG24	e3uvaB2	A: alpha bundles	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: N-terminal domain of Delta(14)-sterol reductase, MaSR1	F: ERG4_ERG24	ECOD (develop294)
A	ERG4_ERG24	e3uvaA2	A: alpha bundles	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: N-terminal domain of Delta(14)-sterol reductase, MaSR1	F: ERG4_ERG24	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	3.20.20.150	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Divalent-metal-dependent TIM barrel enzymes	CATH (4.3.0)
C	3.20.20.150	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Divalent-metal-dependent TIM barrel enzymes	CATH (4.3.0)
B	3.20.20.150	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Divalent-metal-dependent TIM barrel enzymes	CATH (4.3.0)
A	3.20.20.150	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Divalent-metal-dependent TIM barrel enzymes	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	L-Rhamnose isomerase	cation binding manganese ion binding transition metal ion binding ion binding binding metal ion binding small molecule binding isomerase activity intramolecular oxidoreductase activity, interconverting aldoses and ketoses L-rhamnose isomerase activity intramolecular oxidoreductase activity catalytic activity	monosaccharide metabolic process carbohydrate metabolic process small molecule metabolic process metabolic process cellular process primary metabolic process pentose metabolic process L-lyxose metabolic process rhamnose catabolic process catabolic process hexose catabolic process carbohydrate catabolic process hexose metabolic process monosaccharide catabolic process monosaccharide metabolic process carbohydrate metabolic process small molecule metabolic process metabolic process cellular process primary metabolic process pentose metabolic process L-lyxose metabolic process rhamnose catabolic process catabolic process hexose catabolic process carbohydrate catabolic process hexose metabolic process monosaccharide catabolic process small molecule catabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR050337	L-rhamnose isomerase	Family
A, B, C, D	IPR036237	Xylose isomerase-like superfamily	Homologous Superfamily
A, B, C, D	IPR009308	Rhamnose isomerase	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.