3VDL | pdb_00003vdl

Crystal structure of circumsporozoite protein aTSR domain, P43212 form

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C	TPR_2, TPR_P4H	e3vdlC1	A: alpha bundles	X: Ribonuclease H-like	H: ARM repeat	T: ARM repeat	F: TPR_2, TPR_P4H	ECOD (develop294)
B	TPR_2, TPR_P4H	e3vdlB1	A: alpha bundles	X: Ribonuclease H-like	H: ARM repeat	T: ARM repeat	F: TPR_2, TPR_P4H	ECOD (develop294)
A	TPR_2, TPR_P4H	e3vdlA1	A: alpha bundles	X: Ribonuclease H-like	H: ARM repeat	T: ARM repeat	F: TPR_2, TPR_P4H	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
C	2.20.100.10	Mainly Beta	Single Sheet	TSP-1 type 1 repeat	Thrombospondin type-1 (TSP1) repeat	CATH (4.3.0)
B	2.20.100.10	Mainly Beta	Single Sheet	TSP-1 type 1 repeat	Thrombospondin type-1 (TSP1) repeat	CATH (4.3.0)
A	2.20.100.10	Mainly Beta	Single Sheet	TSP-1 type 1 repeat	Thrombospondin type-1 (TSP1) repeat	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C	PF00090	Thrombospondin type 1 domain (TSP_1)	Thrombospondin type 1 domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C	Circumsporozoite (CS) protein	host cell surface binding binding protein binding heparan sulfate proteoglycan binding proteoglycan binding carbohydrate derivative binding	biological process involved in interspecies interaction between organisms symbiont entry into host biological process involved in interaction with host biological process involved in symbiotic interaction symbiont entry into host cell viral process viral life cycle entry into host cell by a symbiont-containing vacuole	cell surface cellular anatomical structure membrane side of membrane cell periphery plasma membrane intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C	IPR000884	Thrombospondin type-1 (TSP1) repeat	Repeat
A, B, C	IPR003067	Plasmodium circumsporozoite protein	Family
A, B, C	IPR051860	Plasmodium Circumsporozoite Invasion Protein	Family
A, B, C	IPR036383	Thrombospondin type-1 repeat superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.