3VW7

Crystal structure of human protease-activated receptor 1 (PAR1) bound with antagonist vorapaxar at 2.2 angstrom

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Membrane Protein Annotation: OPM
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: MemProtMD
Membrane Protein Annotation: mpstruc

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Class A (rhodopsin) G protein-coupled receptor-like	8091183	4001858	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	G protein-coupled receptor-like	8091184	3000473	SCOP2 (2022-06-29)
A	SCOP2B Superfamily	Lysozyme-like	8033861	3001879	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	7tm_1_1	e3vw7A4	A: alpha bundles	X: Family A G protein-coupled receptor-like (From Topology)	H: Family A G protein-coupled receptor-like (From Topology)	T: Family A G protein-coupled receptor-like	F: 7tm_1_1	ECOD (1.6)
A	Phage_lysozyme_2	e3vw7A3	A: a+b complex topology	X: Lysozyme-like (From Homology)	H: Lysozyme-like	T: Lysozyme-like	F: Phage_lysozyme_2	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.20.1070.10	Mainly Alpha	Up-down Bundle	Rhopdopsin 7-helix transmembrane proteins	Rhodopsin 7-helix transmembrane proteins	CATH (4.3.0)
A	1.10.530.40	Mainly Alpha	Orthogonal Bundle	Lysozyme		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00959	Phage lysozyme (Phage_lysozyme)	Phage lysozyme	This family includes lambda phage lysozyme and E. coli endolysin.	Domain
A	PF00001	7 transmembrane receptor (rhodopsin family) (7tm_1)	7 transmembrane receptor (rhodopsin family)	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Proteinase-activated receptor 1, Lysozyme	hydrolase activity, acting on glycosyl bonds peptidoglycan muralytic activity hydrolase activity, hydrolyzing O-glycosyl compounds lysozyme activity hydrolase activity catalytic activity protein binding binding G-protein alpha-subunit binding signaling receptor binding molecular transducer activity G protein-coupled receptor activity transmembrane signaling receptor activity signaling receptor activity hydrolase activity, acting on glycosyl bonds peptidoglycan muralytic activity hydrolase activity, hydrolyzing O-glycosyl compounds lysozyme activity hydrolase activity catalytic activity protein binding binding G-protein alpha-subunit binding signaling receptor binding molecular transducer activity G protein-coupled receptor activity transmembrane signaling receptor activity signaling receptor activity peptide receptor activity thrombin-activated receptor activity proteinase-activated receptor activity G protein-coupled peptide receptor activity G-protein beta-subunit binding	biological process involved in interspecies interaction between organisms response to stimulus response to other organism defense response response to external stimulus response to biotic stimulus defense response to bacterium defense response to other organism response to stress response to bacterium response to external biotic stimulus carbohydrate derivative catabolic process catabolic process peptidoglycan catabolic process biological process involved in interspecies interaction between organisms response to stimulus response to other organism defense response response to external stimulus response to biotic stimulus defense response to bacterium defense response to other organism response to stress response to bacterium response to external biotic stimulus carbohydrate derivative catabolic process catabolic process peptidoglycan catabolic process glycosaminoglycan metabolic process carbohydrate derivative metabolic process aminoglycan catabolic process macromolecule catabolic process glycosaminoglycan catabolic process aminoglycan metabolic process peptidoglycan metabolic process metabolic process macromolecule metabolic process symbiont-mediated cytolysis of host cell viral life cycle disruption of cell in another organism cytolysis biological process involved in interaction with host biological process involved in symbiotic interaction viral release from host cell by cytolysis disruption of cellular anatomical structure in another organism exit from host cell viral process cytolysis in another organism cellular process viral release from host cell disruption of anatomical structure in another organism symbiont-mediated killing of host cell killing of cells of another organism cell killing disruption of plasma membrane integrity in another organism cell wall organization or biogenesis cell wall macromolecule catabolic process cell wall macromolecule metabolic process negative regulation of protein transport protein localization regulation of systemic arterial blood pressure by renin-angiotensin regulation of localization multicellular organismal process regulation of systemic arterial blood pressure by hormone establishment of protein localization system process nitrogen compound transport regulation of cellular process regulation of renal system process regulation of system process negative regulation of biological process negative regulation of transport cell communication localization negative regulation of secretion circulatory system process renal response to blood flow involved in circulatory renin-angiotensin regulation of systemic arterial blood pressure cellular macromolecule localization negative regulation of secretion by cell regulation of biological quality regulation of biological process establishment of protein localization to extracellular region negative regulation of establishment of protein localization regulation of systemic arterial blood pressure by circulatory renin-angiotensin protein secretion establishment of localization regulation of secretion regulation of protein secretion negative regulation of protein secretion regulation of endocrine process renin secretion into blood stream cellular localization regulation of systemic arterial blood pressure mediated by a chemical signal regulation of protein localization transport signaling negative regulation of renin secretion into blood stream protein localization to extracellular region regulation of secretion by cell secretion by cell regulation of renin secretion into blood stream signal release negative regulation of cellular process regulation of multicellular organismal process renal system process involved in regulation of systemic arterial blood pressure blood circulation negative regulation of protein localization renal system process regulation of transport secretion regulation of blood pressure biological regulation regulation of establishment of protein localization export from cell cell-cell signaling regulation of protein transport endocrine process regulation of systemic arterial blood pressure protein transport regulation of cellular localization macromolecule localization multicellular organismal-level homeostasis homeostatic process homeostasis of number of cells within a tissue anatomical structure homeostasis tissue homeostasis homeostasis of number of cells regulation of tube diameter regulation of tube size positive regulation of biological process positive regulation of vasoconstriction regulation of blood circulation vascular process in circulatory system regulation of vasoconstriction positive regulation of multicellular organismal process blood vessel diameter maintenance vasoconstriction regulation of anatomical structure size cellular response to stimulus thrombin-activated receptor signaling pathway G protein-coupled receptor signaling pathway signal transduction leukocyte homeostasis immune system process dendritic cell homeostasis regulation of body fluid levels wound healing cell activation hemostasis blood coagulation coagulation response to wounding platelet activation positive regulation of interleukin-8 production cellular biosynthetic process positive regulation of cellular metabolic process positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of biosynthetic process cytokine production regulation of cytokine production positive regulation of macromolecule metabolic process positive regulation of cellular process regulation of biosynthetic process cellular metabolic process regulation of cellular metabolic process interleukin-8 production regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of cellular biosynthetic process regulation of gene expression biosynthetic process positive regulation of gene expression regulation of macromolecule biosynthetic process positive regulation of cytokine production regulation of metabolic process positive regulation of cellular biosynthetic process regulation of interleukin-8 production phospholipase C-activating G protein-coupled receptor signaling pathway regulation of calcium ion transport positive regulation of calcium ion transport regulation of monoatomic ion transport calcium ion transport metal ion transport positive regulation of transport positive regulation of monoatomic ion transport monoatomic ion transport monoatomic cation transport regulation of metal ion transport positive regulation of coagulation regulation of response to external stimulus positive regulation of blood coagulation regulation of response to wounding regulation of coagulation positive regulation of response to stimulus regulation of response to stress positive regulation of hemostasis regulation of hemostasis positive regulation of response to wounding regulation of blood coagulation positive regulation of wound healing regulation of response to stimulus regulation of wound healing vesicle organization cellular component organization platelet dense granule organization organelle organization secretory granule organization cellular component organization or biogenesis endomembrane system organization interleukin-1 production regulation of interleukin-1 beta production regulation of interleukin-1 production interleukin-1 beta production collagen biosynthetic process regulation of collagen biosynthetic process regulation of collagen metabolic process positive regulation of collagen metabolic process positive regulation of collagen biosynthetic process collagen metabolic process cell junction organization neuromuscular junction development establishment of synaptic specificity at neuromuscular junction synapse organization positive regulation of cytosolic calcium ion concentration positive regulation of cell communication positive regulation of signal transduction positive regulation of canonical NF-kappaB signal transduction regulation of signal transduction intracellular signal transduction regulation of intracellular signal transduction intracellular signaling cassette regulation of signaling positive regulation of intracellular signal transduction canonical NF-kappaB signal transduction regulation of cell communication regulation of canonical NF-kappaB signal transduction positive regulation of signaling regulation of catalytic activity positive regulation of protein metabolic process positive regulation of peptidase activity positive regulation of cysteine-type endopeptidase activity involved in apoptotic process regulation of primary metabolic process positive regulation of molecular function regulation of cysteine-type endopeptidase activity involved in apoptotic process regulation of proteolysis proteolysis regulation of endopeptidase activity protein metabolic process activation of cysteine-type endopeptidase activity involved in apoptotic process regulation of cysteine-type endopeptidase activity regulation of protein metabolic process regulation of peptidase activity positive regulation of catalytic activity primary metabolic process regulation of molecular function positive regulation of hydrolase activity positive regulation of cysteine-type endopeptidase activity regulation of hydrolase activity positive regulation of endopeptidase activity positive regulation of proteolysis positive regulation of ERK1 and ERK2 cascade positive regulation of MAPK cascade regulation of MAPK cascade MAPK cascade ERK1 and ERK2 cascade regulation of ERK1 and ERK2 cascade interleukin-6 production positive regulation of interleukin-6 production regulation of interleukin-6 production regulation of GTPase activity positive regulation of GTPase activity nervous system process sensory perception of pain regulation of nervous system process sensory perception regulation of sensory perception regulation of sensory perception of pain connective tissue replacement involved in inflammatory response wound healing wound healing involved in inflammatory response inflammatory response to wounding tissue remodeling connective tissue replacement inflammatory response small GTPase-mediated signal transduction regulation of small GTPase mediated signal transduction Rho protein signal transduction regulation of Rho protein signal transduction positive regulation of Rho protein signal transduction positive regulation of small GTPase mediated signal transduction trans-synaptic signaling trans-synaptic signaling, modulating synaptic transmission modulation of chemical synaptic transmission trans-synaptic signaling by endocannabinoid chemical synaptic transmission synaptic signaling regulation of trans-synaptic signaling trans-synaptic signaling by lipid, modulating synaptic transmission anterograde trans-synaptic signaling trans-synaptic signaling by lipid trans-synaptic signaling by endocannabinoid, modulating synaptic transmission regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction phosphatidylinositol 3-kinase/protein kinase B signal transduction developmental process anatomical structure morphogenesis anatomical structure development neuron apoptotic process negative regulation of neuron apoptotic process negative regulation of programmed cell death regulation of apoptotic process regulation of programmed cell death cell death negative regulation of apoptotic process apoptotic process programmed cell death regulation of neuron apoptotic process negative regulation of glomerular filtration regulation of glomerular filtration renal system process involved in regulation of blood volume negative regulation of multicellular organismal process glomerular filtration renal filtration cell population proliferation positive regulation of cell population proliferation regulation of cell population proliferation negative regulation of cell population proliferation positive regulation of locomotion regulation of cell motility positive regulation of cell migration regulation of locomotion positive regulation of cell motility regulation of cell migration cell migration cell motility locomotion inorganic ion homeostasis intracellular calcium ion homeostasis monoatomic ion transmembrane transport calcium ion homeostasis negative regulation of sequestering of calcium ion maintenance of location in cell monoatomic cation transmembrane transport intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis regulation of sequestering of calcium ion intracellular monoatomic ion homeostasis calcium ion transmembrane import into cytosol sequestering of calcium ion inorganic ion transmembrane transport inorganic cation transmembrane transport maintenance of location transmembrane transport release of sequestered calcium ion into cytosol cellular homeostasis chemical homeostasis calcium ion transmembrane transport cell surface receptor signaling pathway via STAT positive regulation of receptor signaling pathway via STAT positive regulation of receptor signaling pathway via JAK-STAT regulation of receptor signaling pathway via JAK-STAT cell surface receptor signaling pathway regulation of receptor signaling pathway via STAT cell surface receptor signaling pathway via JAK-STAT regulation of synaptic plasticity positive regulation of DNA-templated transcription RNA metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process positive regulation of nucleobase-containing compound metabolic process nucleobase-containing compound biosynthetic process nucleic acid metabolic process positive regulation of RNA metabolic process positive regulation of RNA biosynthetic process regulation of DNA-templated transcription positive regulation of smooth muscle contraction muscle contraction muscle system process regulation of muscle system process smooth muscle contraction regulation of muscle contraction regulation of smooth muscle contraction positive regulation of muscle contraction cell junction maintenance cellular component maintenance cell-cell junction maintenance cell-cell junction organization positive regulation of cation transmembrane transport positive regulation of monoatomic ion transmembrane transport regulation of release of sequestered calcium ion into cytosol regulation of transmembrane transport regulation of monoatomic ion transmembrane transport regulation of calcium ion transmembrane transport positive regulation of calcium ion transmembrane transport positive regulation of transmembrane transport positive regulation of release of sequestered calcium ion into cytosol regulation of monoatomic cation transmembrane transport response to lipid response to oxygen-containing compound response to lipopolysaccharide response to chemical response to molecule of bacterial origin	host cellular component host intracellular part host cell cytoplasm host cell part host intracellular region cellular anatomical entity cell periphery postsynapse postsynaptic membrane synapse cell junction membrane plasma membrane plasma membrane region host cellular component host intracellular part host cell cytoplasm host cell part host intracellular region cellular anatomical entity cell periphery postsynapse postsynaptic membrane synapse cell junction membrane plasma membrane plasma membrane region synaptic membrane neuromuscular junction membrane-bounded organelle intracellular organelle intracellular anatomical structure Golgi apparatus organelle cytoplasm intracellular membrane-bounded organelle endomembrane system cell surface membrane microdomain membrane raft plasma membrane raft caveola early endosome endosome intracellular vesicle cytoplasmic vesicle vesicle extracellular region platelet dense tubular network late endosome

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR052619	Bacteriophage lysozyme-like	Family
A	IPR001165	T4-type lysozyme	Family
A	IPR034690	Endolysin T4 type	Family
A	IPR002196	Glycoside hydrolase, family 24	Family
A	IPR023347	Lysozyme domain superfamily	Homologous Superfamily
A	IPR023346	Lysozyme-like domain superfamily	Homologous Superfamily
A	IPR000935	Thrombin receptor	Family
A	IPR000276	G protein-coupled receptor, rhodopsin-like	Family
A	IPR017452	GPCR, rhodopsin-like, 7TM	Domain
A	IPR003912	Protease-activated receptor	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: P25116	Neoplasms, Experimental gastric cancer cirrhosis of liver hepatitis malignant ependymoma medulloblastoma ovarian cancer acute myeloid leukemia primitive neuroectodermal tumor thrombotic disease glioblastoma hereditary diffuse gastric adenocarcinoma large cell medulloblastoma malignant glioma oligodendroglioma Neoplasms, Experimental gastric cancer cirrhosis of liver hepatitis malignant ependymoma medulloblastoma ovarian cancer acute myeloid leukemia primitive neuroectodermal tumor thrombotic disease glioblastoma hereditary diffuse gastric adenocarcinoma large cell medulloblastoma malignant glioma oligodendroglioma pancreatic ductal adenocarcinoma astrocytic tumor Sjogren syndrome ulcerative colitis fatty liver disease gastric carcinoma head and neck cancer nasopharyngeal carcinoma osteosarcoma pilocytic astrocytoma atypical teratoid rhabdoid tumor esophageal adenocarcinoma gastric neoplasm interstitial cystitis

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A	OPM	Transmembrane	Alpha-helical polytopic	Rhodopsin-like receptors and pumps	G-protein coupled receptors, family A

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

Chains	External Link	Comment
A	MemProtMD	Annotated as membrane protein by MemProtMD

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A	mpstruc	TRANSMEMBRANE PROTEINS: ALPHA-HELICAL	G Protein-Coupled Receptors: Class A	Protease-activated receptor 1 (PAR1) bound with antagonist vorapaxar

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.