3WDP

Structural analysis of a beta-glucosidase mutant derived from a hyperthermophilic tetrameric structure

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A [auth P]	d3wdpp1	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	(Trans)glycosidases	Family 1 of glycosyl hydrolase	automated matches	(Pyrococcus furiosus ) [TaxId: 2261 ],	SCOPe (2.08)
A [auth P]	d3wdpp2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Pyrococcus furiosus ) [TaxId: 2261 ],	SCOPe (2.08)
B [auth Q]	d3wdpq1	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	(Trans)glycosidases	Family 1 of glycosyl hydrolase	automated matches	(Pyrococcus furiosus ) [TaxId: 2261 ],	SCOPe (2.08)
B [auth Q]	d3wdpq2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Pyrococcus furiosus ) [TaxId: 2261 ],	SCOPe (2.08)
C [auth R]	d3wdpr1	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	(Trans)glycosidases	Family 1 of glycosyl hydrolase	automated matches	(Pyrococcus furiosus ) [TaxId: 2261 ],	SCOPe (2.08)
C [auth R]	d3wdpr2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Pyrococcus furiosus ) [TaxId: 2261 ],	SCOPe (2.08)
D [auth S]	d3wdps1	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	(Trans)glycosidases	Family 1 of glycosyl hydrolase	automated matches	(Pyrococcus furiosus ) [TaxId: 2261 ],	SCOPe (2.08)
D [auth S]	d3wdps2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Pyrococcus furiosus ) [TaxId: 2261 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A [auth P]	SCOP2 Family	Family 1 of glycosyl hydrolase	8065773	4003184	SCOP2 (2022-06-29)
A [auth P]	SCOP2 Superfamily	(Trans)glycosidases	8065774	3000313	SCOP2 (2022-06-29)
B [auth Q]	SCOP2B Superfamily	(Trans)glycosidases	8065774	3000313	SCOP2B (2022-06-29)
C [auth R]	SCOP2B Superfamily	(Trans)glycosidases	8065774	3000313	SCOP2B (2022-06-29)
D [auth S]	SCOP2B Superfamily	(Trans)glycosidases	8065774	3000313	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth P]	Glyco_hydro_1	e3wdpP1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: Glyco_hydro_1	ECOD (1.6)
B [auth Q]	Glyco_hydro_1	e3wdpQ1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: Glyco_hydro_1	ECOD (1.6)
C [auth R]	Glyco_hydro_1	e3wdpR1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: Glyco_hydro_1	ECOD (1.6)
D [auth S]	Glyco_hydro_1	e3wdpS1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: Glyco_hydro_1	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A [auth P]	3.20.20.80	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Glycosidases	CATH (4.3.0)
B [auth Q]	3.20.20.80	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Glycosidases	CATH (4.3.0)
C [auth R]	3.20.20.80	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Glycosidases	CATH (4.3.0)
D [auth S]	3.20.20.80	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Glycosidases	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth P], B [auth Q], C [auth R], D [auth S]	PF00232	Glycosyl hydrolase family 1 (Glyco_hydro_1)	Glycosyl hydrolase family 1		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth P], B [auth Q], C [auth R], D [auth S]	Beta-glucosidase	hydrolase activity, acting on glycosyl bonds glucosidase activity hydrolase activity, hydrolyzing O-glycosyl compounds hydrolase activity beta-glucosidase activity catalytic activity	carbohydrate metabolic process primary metabolic process metabolic process cellular process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth P], B [auth Q], C [auth R], D [auth S]	IPR053427	Beta-galactosidase	Family
A [auth P], B [auth Q], C [auth R], D [auth S]	IPR001360	Glycoside hydrolase family 1	Family
A [auth P], B [auth Q], C [auth R], D [auth S]	IPR018120	Glycoside hydrolase family 1, active site	Active Site
A [auth P], B [auth Q], C [auth R], D [auth S]	IPR017853	Glycoside hydrolase superfamily	Homologous Superfamily
A [auth P], B [auth Q], C [auth R], D [auth S]	IPR033132	Glycosyl hydrolases family 1, N-terminal conserved site	Conserved Site

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.