3ZKX
TERNARY BACE2 XAPERONE COMPLEX
External Resource: Annotation
- Domain Annotation: SCOP/SCOPe Classification
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Domain Annotation: CATH
- IMGT Antibody Annotation
- SAbDab Antibody Annotation
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Pharos: Disease Associations
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d3zkxa_ | All beta proteins | Acid proteases | Acid proteases | automated matches | automated matches | HUMAN (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
B | d3zkxb1 | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | V set domains (antibody variable domain-like) | automated matches | LLAMA (Lama glama ) [TaxId: 9844 ], | SCOPe (2.08) |
B | d3zkxb2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | LLAMA (Lama glama ) [TaxId: 9844 ], | SCOPe (2.08) |
C | d3zkxc1 | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | V set domains (antibody variable domain-like) | automated matches | LLAMA (Lama glama ) [TaxId: 9844 ], | SCOPe (2.08) |
C | d3zkxc2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | LLAMA (Lama glama ) [TaxId: 9844 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Asp_C_1 | e3zkxA2 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: Asp_C_1 | ECOD (1.6) |
A | Asp_N | e3zkxA3 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: Asp_N | ECOD (1.6) |
B | V-set_12 | e3zkxB1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_12 | ECOD (1.6) |
C | V-set_8 | e3zkxC1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.40.70.10 | Mainly Beta | Beta Barrel | Cathepsin D, subunit A | domain 1 | CATH (4.3.0) |
B | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
C | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
XA4813 | VH | Lama glama (llama) | IGHV3S6*01, IGHJ4*01 | V-DOMAIN VH | IG | (VH) | IMGT (202443-0) | |
XA4815 | VH | Lama glama (llama) | IGHV3S5*01, IGHJ4*01 | V-DOMAIN VH | IG | (VH) | IMGT (202443-0) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
Heavy Chain | IGHV3 | - | beta-secretase 2 | SAbDab (2024-11-01) | |
Heavy Chain | IGHV3 | - | beta-secretase 2 | SAbDab (2024-11-01) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00026 | Eukaryotic aspartyl protease (Asp) | Eukaryotic aspartyl protease | - | Family | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR001461 | Aspartic peptidase A1 | Family | |
IPR009121 | Beta-secretase BACE2 | Family | |
IPR033121 | Peptidase family A1 domain | Domain | |
IPR033874 | Memapsin-like | Domain | |
IPR009119 | Beta-secretase BACE | Family | |
IPR021109 | Aspartic peptidase domain superfamily | Homologous Superfamily | |
IPR001969 | Aspartic peptidase, active site | Active Site |