Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyWD40 repeat-like 8052530 3001694 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyWD40 repeat-like 8051194 3001694 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyWD40 repeat-like 8052531 3001694 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyWD40 repeat-like 8052530 3001694 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyWD40 repeat-like 8052531 3001694 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyWD40 repeat-like 8051194 3001694 SCOP2B (2022-06-29)
G [auth H]SCOP2B SuperfamilyCullin repeat-like 8084780 3000059 SCOP2B (2022-06-29)
G [auth H]SCOP2B SuperfamilyWinged helix DNA-binding domain 8088858 3000034 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyWinged helix DNA-binding domain 8088858 3000034 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyCullin repeat-like 8084780 3000059 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ACPSF_A_Ne4a0lA3 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: CPSF_A_NECOD (1.6)
AMMS1_N_Ce4a0lA2 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: MMS1_N_CECOD (1.6)
AMMS1_N_Ne4a0lA1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: MMS1_N_NECOD (1.6)
ACPSF_A_Ce4a0lA4 A: alpha arraysX: HTHH: HTHT: tri-helicalF: CPSF_A_CECOD (1.6)
CCPSF_A_Ne4a0lC3 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: CPSF_A_NECOD (1.6)
CMMS1_N_Ce4a0lC2 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: MMS1_N_CECOD (1.6)
CMMS1_N_Ne4a0lC1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: MMS1_N_NECOD (1.6)
CCPSF_A_Ce4a0lC4 A: alpha arraysX: HTHH: HTHT: tri-helicalF: CPSF_A_CECOD (1.6)
BANAPC4_WD40_4e4a0lB1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_4ECOD (1.6)
DANAPC4_WD40_4e4a0lD1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_4ECOD (1.6)
G [auth H]Cullin_Nedd8e4a0lH10 A: alpha arraysX: HTHH: HTHT: wingedF: Cullin_Nedd8ECOD (1.6)
G [auth H]Cullin_4the4a0lH9 A: alpha arraysX: HTHH: HTHT: wingedF: Cullin_4thECOD (1.6)
G [auth H]Cullin_1ste4a0lH6 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: Cullin_1stECOD (1.6)
G [auth H]Cullin_2nde4a0lH8 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: Cullin_2ndECOD (1.6)
G [auth H]Cullin_3rde4a0lH7 A: a+b duplicates or obligate multimersX: a+b domain in cullin-like proteins (From Topology)H: a+b domain in cullin-like proteins (From Topology)T: a+b domain in cullin-like proteinsF: Cullin_3rdECOD (1.6)
ECullin_Nedd8e4a0lE10 A: alpha arraysX: HTHH: HTHT: wingedF: Cullin_Nedd8ECOD (1.6)
ECullin_4the4a0lE9 A: alpha arraysX: HTHH: HTHT: wingedF: Cullin_4thECOD (1.6)
ECullin_1ste4a0lE6 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: Cullin_1stECOD (1.6)
ECullin_2nde4a0lE8 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: Cullin_2ndECOD (1.6)
ECullin_3rde4a0lE7 A: a+b duplicates or obligate multimersX: a+b domain in cullin-like proteins (From Topology)H: a+b domain in cullin-like proteins (From Topology)T: a+b domain in cullin-like proteinsF: Cullin_3rdECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, C
PF10433RSE1/DDB1/CPSF1 first beta-propeller (Beta-prop_RSE1_1st)RSE1/DDB1/CPSF1 first beta-propeller- Repeat
A, C
PF03178CPSF A subunit region (CPSF_A)CPSF A subunit region- Repeat
B, D
PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
E,
G [auth H]
PF00888Cullin family (Cullin)Cullin family- Repeat
E,
G [auth H]
PF10557Cullin protein neddylation domain (Cullin_Nedd8)Cullin protein neddylation domainThis is the neddylation site of cullin proteins which are a family of structurally related proteins containing an evolutionarily conserved cullin domain. With the exception of APC2, each member of the cullin family is modified by Nedd8 and several cu ...Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
J [auth S],
L [auth U]
12 BP DNA DUPLEX---
A, C
DNA DAMAGE-BINDING PROTEIN 1
B, D
DNA DAMAGE-BINDING PROTEIN 2
E,
G [auth H]
CULLIN-4B
F,
H [auth I]
E3 UBIQUITIN-PROTEIN LIGASE RBX1
I [auth R],
K [auth T]
12 BP THF CONTAINING DNA DUPLEX---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, C
IPR018846RSE1/DDB1/CPSF1, first beta-propeller domainDomain
A, C
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
A, C
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
A, C
IPR004871Cleavage/polyadenylation specificity factor, A subunit, C-terminalDomain
A, C
IPR050358RSE1/DDB1/CFT1/CPSF1Family
B, D
IPR019775WD40 repeat, conserved siteConserved Site
B, D
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
B, D
IPR001680WD40 repeatRepeat
B, D
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
B, D
IPR033312DNA damage-binding protein 2Family
E,
G [auth H]
IPR045093CullinFamily
E,
G [auth H]
IPR019559Cullin protein, neddylation domainDomain
E,
G [auth H]
IPR016158Cullin homology domainDomain
E,
G [auth H]
IPR016157Cullin, conserved siteConserved Site
E,
G [auth H]
IPR001373Cullin, N-terminalDomain
E,
G [auth H]
IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
E,
G [auth H]
IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
E,
G [auth H]
IPR036317Cullin homology domain superfamilyHomologous Superfamily
E,
G [auth H]
IPR016159Cullin repeat-like-containing domain superfamilyHomologous Superfamily
F,
H [auth I]
IPR051031RING-box E3 Ubiquitin LigaseFamily
F,
H [auth I]
IPR024766Zinc finger, RING-H2-typeDomain
F,
H [auth I]
IPR013083Zinc finger, RING/FYVE/PHD-typeHomologous Superfamily
F,
H [auth I]
IPR001841Zinc finger, RING-typeDomain