4A0L
Structure of DDB1-DDB2-CUL4B-RBX1 bound to a 12 bp abasic site containing DNA-duplex
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | WD40 repeat-like | 8052530 | 3001694 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | WD40 repeat-like | 8051194 | 3001694 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | WD40 repeat-like | 8052531 | 3001694 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | WD40 repeat-like | 8052530 | 3001694 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | WD40 repeat-like | 8052531 | 3001694 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | WD40 repeat-like | 8051194 | 3001694 | SCOP2B (2022-06-29) |
G [auth H] | SCOP2B Superfamily | Cullin repeat-like | 8084780 | 3000059 | SCOP2B (2022-06-29) |
G [auth H] | SCOP2B Superfamily | Winged helix DNA-binding domain | 8088858 | 3000034 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Winged helix DNA-binding domain | 8088858 | 3000034 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Cullin repeat-like | 8084780 | 3000059 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | CPSF_A_N | e4a0lA3 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: CPSF_A_N | ECOD (1.6) |
A | MMS1_N_C | e4a0lA2 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: MMS1_N_C | ECOD (1.6) |
A | MMS1_N_N | e4a0lA1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: MMS1_N_N | ECOD (1.6) |
A | CPSF_A_C | e4a0lA4 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: CPSF_A_C | ECOD (1.6) |
C | CPSF_A_N | e4a0lC3 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: CPSF_A_N | ECOD (1.6) |
C | MMS1_N_C | e4a0lC2 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: MMS1_N_C | ECOD (1.6) |
C | MMS1_N_N | e4a0lC1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: MMS1_N_N | ECOD (1.6) |
C | CPSF_A_C | e4a0lC4 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: CPSF_A_C | ECOD (1.6) |
B | ANAPC4_WD40_4 | e4a0lB1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: ANAPC4_WD40_4 | ECOD (1.6) |
D | ANAPC4_WD40_4 | e4a0lD1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: ANAPC4_WD40_4 | ECOD (1.6) |
G [auth H] | Cullin_Nedd8 | e4a0lH10 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: Cullin_Nedd8 | ECOD (1.6) |
G [auth H] | Cullin_4th | e4a0lH9 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: Cullin_4th | ECOD (1.6) |
G [auth H] | Cullin_1st | e4a0lH6 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: Cullin_1st | ECOD (1.6) |
G [auth H] | Cullin_2nd | e4a0lH8 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: Cullin_2nd | ECOD (1.6) |
G [auth H] | Cullin_3rd | e4a0lH7 | A: a+b duplicates or obligate multimers | X: a+b domain in cullin-like proteins (From Topology) | H: a+b domain in cullin-like proteins (From Topology) | T: a+b domain in cullin-like proteins | F: Cullin_3rd | ECOD (1.6) |
E | Cullin_Nedd8 | e4a0lE10 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: Cullin_Nedd8 | ECOD (1.6) |
E | Cullin_4th | e4a0lE9 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: Cullin_4th | ECOD (1.6) |
E | Cullin_1st | e4a0lE6 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: Cullin_1st | ECOD (1.6) |
E | Cullin_2nd | e4a0lE8 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: Cullin_2nd | ECOD (1.6) |
E | Cullin_3rd | e4a0lE7 | A: a+b duplicates or obligate multimers | X: a+b domain in cullin-like proteins (From Topology) | H: a+b domain in cullin-like proteins (From Topology) | T: a+b domain in cullin-like proteins | F: Cullin_3rd | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF10433 | RSE1/DDB1/CPSF1 first beta-propeller (Beta-prop_RSE1_1st) | RSE1/DDB1/CPSF1 first beta-propeller | - | Repeat | |
PF03178 | CPSF A subunit region (CPSF_A) | CPSF A subunit region | - | Repeat | |
PF00400 | WD domain, G-beta repeat (WD40) | WD domain, G-beta repeat | - | Repeat | |
E, G [auth H] | PF00888 | Cullin family (Cullin) | Cullin family | - | Repeat |
E, G [auth H] | PF10557 | Cullin protein neddylation domain (Cullin_Nedd8) | Cullin protein neddylation domain | This is the neddylation site of cullin proteins which are a family of structurally related proteins containing an evolutionarily conserved cullin domain. With the exception of APC2, each member of the cullin family is modified by Nedd8 and several cu ... | Domain |