The X-ray crystal structures of D-alanyl-D-alanine ligase in complex ADP and D-cycloserine phosphate
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B | d4c5ab1 | Alpha and beta proteins (a/b) | PreATP-grasp domain | PreATP-grasp domain | automated matches | automated matches | (Escherichia coli K-12 ) [TaxId: 83333 ], | SCOPe (2.08) |
| B | d4c5ab2 | Alpha and beta proteins (a+b) | ATP-grasp | Glutathione synthetase ATP-binding domain-like | ATP-binding domain of peptide synthetases | automated matches | (Escherichia coli K-12 ) [TaxId: 83333 ], | SCOPe (2.08) |
| A | d4c5aa1 | Alpha and beta proteins (a/b) | PreATP-grasp domain | PreATP-grasp domain | automated matches | automated matches | (Escherichia coli K-12 ) [TaxId: 83333 ], | SCOPe (2.08) |
| A | d4c5aa2 | Alpha and beta proteins (a+b) | ATP-grasp | Glutathione synthetase ATP-binding domain-like | ATP-binding domain of peptide synthetases | automated matches | (Escherichia coli K-12 ) [TaxId: 83333 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B | PPR_1, PPR_2, PPR_long, TPR_24 | e4c5aB1 | A: alpha arrays | X: Formyltransferase | H: Formyltransferase | T: Formyltransferase | F: PPR_1, PPR_2, PPR_long, TPR_24 | ECOD (v295.2) |
| A | PPR_1, PPR_2, PPR_long, TPR_24 | e4c5aA1 | A: alpha arrays | X: Formyltransferase | H: Formyltransferase | T: Formyltransferase | F: PPR_1, PPR_2, PPR_long, TPR_24 | ECOD (v295.2) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| B | 3.40.50.20 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | CATH (4.3.0) | |
| B | 3.30.470.20 | Alpha Beta | 2-Layer Sandwich | D-amino Acid Aminotransferase | Chain A, domain 1 | CATH (4.3.0) |
| B | 3.30.1490.20 | Alpha Beta | 2-Layer Sandwich | Dna Ligase | domain 1 | CATH (4.3.0) |
| A | 3.40.50.20 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | CATH (4.3.0) | |
| A | 3.30.470.20 | Alpha Beta | 2-Layer Sandwich | D-amino Acid Aminotransferase | Chain A, domain 1 | CATH (4.3.0) |
| A | 3.30.1490.20 | Alpha Beta | 2-Layer Sandwich | Dna Ligase | domain 1 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF07478 | D-ala D-ala ligase C-terminus (Dala_Dala_lig_C) | D-ala D-ala ligase C-terminus | - | Family | |
| PF01820 | D-ala D-ala ligase N-terminus (Dala_Dala_lig_N) | D-ala D-ala ligase N-terminus | - | Family |