Crystal structure of the membrane domain of respiratory complex I from Thermus thermophilus
External Resource: Annotation
- Domain Annotation: SCOP/SCOPe Classification
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Domain Annotation: CATH
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Membrane Protein Annotation: PDBTM
- Membrane Protein Annotation: MemProtMD
- Membrane Protein Annotation: mpstruc
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| N [auth C] | SCOP2B Superfamily | Antiporter subunits half-channel-like | 8054148 | 3002280 | SCOP2B (2022-06-29) |
| G [auth H] | SCOP2B Superfamily | Antiporter subunits half-channel-like | 8054148 | 3002280 | SCOP2B (2022-06-29) |
| M [auth I] | SCOP2 Family | ND4 antiporter-like subunits | 8047665 | 4005749 | SCOP2 (2022-06-29) |
| M [auth I] | SCOP2 Superfamily | Antiporter subunits half-channel-like | 8054159 | 3002280 | SCOP2 (2022-06-29) |
| M [auth I] | SCOP2 Superfamily | Antiporter subunits half-channel-like | 8054158 | 3002280 | SCOP2 (2022-06-29) |
| F [auth N] | SCOP2B Superfamily | Antiporter subunits half-channel-like | 8054158 | 3002280 | SCOP2B (2022-06-29) |
| F [auth N] | SCOP2B Superfamily | Antiporter subunits half-channel-like | 8054159 | 3002280 | SCOP2B (2022-06-29) |
| E [auth M] | SCOP2B Superfamily | Antiporter subunits half-channel-like | 8054163 | 3002280 | SCOP2B (2022-06-29) |
| E [auth M] | SCOP2B Superfamily | Antiporter subunits half-channel-like | 8054162 | 3002280 | SCOP2B (2022-06-29) |
| L [auth G] | SCOP2B Superfamily | Antiporter subunits half-channel-like | 8054163 | 3002280 | SCOP2B (2022-06-29) |
| L [auth G] | SCOP2B Superfamily | Antiporter subunits half-channel-like | 8054162 | 3002280 | SCOP2B (2022-06-29) |
| K [auth F] | SCOP2B Superfamily | Antiporter subunits half-channel-like | 8054164 | 3002280 | SCOP2B (2022-06-29) |
| K [auth F] | SCOP2B Superfamily | Antiporter subunits half-channel-like | 8047669 | 3002280 | SCOP2B (2022-06-29) |
| D [auth L] | SCOP2B Superfamily | Antiporter subunits half-channel-like | 8054164 | 3002280 | SCOP2B (2022-06-29) |
| D [auth L] | SCOP2B Superfamily | Antiporter subunits half-channel-like | 8047669 | 3002280 | SCOP2B (2022-06-29) |
| J [auth E] | SCOP2B Superfamily | NADH-quinone oxidoreductase, subunit 11-like | 8053512 | 3002200 | SCOP2B (2022-06-29) |
| C [auth K] | SCOP2B Superfamily | NADH-quinone oxidoreductase, subunit 11-like | 8053512 | 3002200 | SCOP2B (2022-06-29) |
| I [auth D] | SCOP2B Superfamily | NADH-quinone oxidoreductase, subunit 11-like | 8053515 | 3002200 | SCOP2B (2022-06-29) |
| B [auth J] | SCOP2B Superfamily | NADH-quinone oxidoreductase, subunit 11-like | 8053515 | 3002200 | SCOP2B (2022-06-29) |
| H [auth B] | SCOP2B Superfamily | NADH-quinone oxidoreductase, subunit 11-like | 8106702 | 3002200 | SCOP2B (2022-06-29) |
| A | SCOP2 Family | NADH-ubiquinone oxidoreductase chain 3-like | 8047839 | 4005842 | SCOP2 (2022-06-29) |
| A | SCOP2 Superfamily | NADH-quinone oxidoreductase, subunit 11-like | 8106702 | 3002200 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| N [auth C] | e4he8C1 | A: Ribonuclease H-like | X: Ribonuclease H-like | H: Ribonuclease H-like | T: FRB_dom | F: | ECOD (20:10:01) | |
| G [auth H] | e4he8H1 | A: Ribonuclease H-like | X: Ribonuclease H-like | H: Ribonuclease H-like | T: FRB_dom | F: | ECOD (20:10:01) | |
| M [auth I] | e4he8I1 | A: beta-Grasp | X: Ubiquitin-related | H: Ubiquitin-like | T: Clenterotox | F: | ECOD (20:10:01) | |
| F [auth N] | e4he8N1 | A: Rossmann-like | X: Rossmann-related | H: NagB/RpiA/CoA transferase-like | T: Oxidored_q6 | F: | ECOD (20:10:01) | |
| E [auth M] | e4he8M1 | A: Rossmann-like | X: Rossmann-related | H: NagB/RpiA/CoA transferase-like | T: Oxidored_q6 | F: | ECOD (20:10:01) | |
| L [auth G] | e4he8G1 | A: beta-Grasp | X: Ubiquitin-related | H: Ubiquitin-like | T: Clenterotox | F: | ECOD (20:10:01) | |
| K [auth F] | e4he8F1 | A: beta-Grasp | X: Ubiquitin-related | H: Ubiquitin-like | T: ABC_tran | F: | ECOD (20:10:01) | |
| D [auth L] | e4he8L1 | A: Rossmann-like | X: Rossmann-related | H: NagB/RpiA/CoA transferase-like | T: Proton_antipo_M,Proton_antipo_N | F: | ECOD (20:10:01) | |
| J [auth E] | e4he8E1 | A: beta-Grasp | X: Ubiquitin-related | H: Ubiquitin-like | T: FtsJ | F: | ECOD (20:10:01) | |
| C [auth K] | e4he8K1 | A: Alpha-beta plaits | X: Phage tail protein-like | H: Phage tail protein-like | T: T4-gp15_tss | F: | ECOD (20:10:01) | |
| I [auth D] | e4he8D1 | A: SSHS domain | X: Class II aaRS and biotin synthetases | H: Ribosome modulation factor | T: DHR-2_Lobe_A | F: | ECOD (20:10:01) | |
| B [auth J] | e4he8J1 | A: SSHS domain | X: Class II aaRS and biotin synthetases | H: Ribosome modulation factor | T: RMF | F: | ECOD (20:10:01) | |
| H [auth B] | e4he8B2 | A: DEATH domain | X: Ten stranded beta/alpha barrel | H: Ten stranded beta/alpha barrel | T: Acetyltransf_1 | F: | ECOD (20:10:01) | |
| A | e4he8A1 | A: SSHS domain | X: Class II aaRS and biotin synthetases | H: Ribosome modulation factor | T: RMF | F: | ECOD (20:10:01) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| G [auth H], N [auth C] | PF00146 | NADH dehydrogenase (NADHdh) | NADH dehydrogenase | - | Family |
| F [auth N], M [auth I] | PF00361 | NADH:quinone oxidoreductase/Mrp antiporter, TM (Proton_antipo_M) | NADH:quinone oxidoreductase/Mrp antiporter, TM | This entry includes membrane transporters and represents some 7 of potentially 14-16 TM regions. In many instances, its members forms part of complex I that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associa ... | Domain |
| E [auth M], L [auth G] | PF00361 | NADH:quinone oxidoreductase/Mrp antiporter, TM (Proton_antipo_M) | NADH:quinone oxidoreductase/Mrp antiporter, TM | This entry includes membrane transporters and represents some 7 of potentially 14-16 TM regions. In many instances, its members forms part of complex I that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associa ... | Domain |
| D [auth L], K [auth F] | PF00361 | NADH:quinone oxidoreductase/Mrp antiporter, TM (Proton_antipo_M) | NADH:quinone oxidoreductase/Mrp antiporter, TM | This entry includes membrane transporters and represents some 7 of potentially 14-16 TM regions. In many instances, its members forms part of complex I that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associa ... | Domain |
| D [auth L], K [auth F] | PF00662 | NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus (Proton_antipo_N) | NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus | This entry represents an amino terminal extension of Pfam:PF00361. Only NADH-Ubiquinone chain 5 and eubacterial chain L are in this family. This sub-family is part of complex I which catalyses the transfer of two electrons from NADH to ubiquinone in ... | Domain |
| C [auth K], J [auth E] | PF00420 | NADH-ubiquinone/plastoquinone oxidoreductase chain 4L (Oxidored_q2) | NADH-ubiquinone/plastoquinone oxidoreductase chain 4L | - | Family |
| B [auth J], I [auth D] | PF00499 | NADH-ubiquinone/plastoquinone oxidoreductase chain 6 (Oxidored_q3) | NADH-ubiquinone/plastoquinone oxidoreductase chain 6 | - | Family |
| A, H [auth B] | PF00507 | NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 (Oxidored_q4) | NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
| Chains | External Link | Comment |
|---|---|---|
| PDBTM | Annotated as membrane protein by PDBTM |
Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage
| Chains | External Link | Comment |
|---|---|---|
| MemProtMD | Annotated as membrane protein by MemProtMD |
Membrane Protein Annotation: mpstruc mpstruc Database Homepage
| Chains | Resource Link | Group | Subgroup | Protein |
|---|---|---|---|---|
| mpstruc | TRANSMEMBRANE PROTEINS: ALPHA-HELICAL | Electron Transport Chain Complexes: Complex I | Complex I complete |














