4HEA

Crystal structure of the entire respiratory complex I from Thermus thermophilus

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: OPM
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: MemProtMD
Membrane Protein Annotation: mpstruc

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
C [auth 3]	SCOP2B Superfamily	Formate dehydrogenase/DMSO reductase, domains 1-3	8041346	3001453	SCOP2B (2022-06-29)
C [auth 3]	SCOP2B Superfamily	ADC-like	8041345	3001132	SCOP2B (2022-06-29)
C [auth 3]	SCOP2B Superfamily	2Fe-2S ferredoxin-like	8041347	3000113	SCOP2B (2022-06-29)
C [auth 3]	SCOP2B Superfamily	4Fe-4S ferredoxins	8041348	3000020	SCOP2B (2022-06-29)
S [auth D]	SCOP2B Superfamily	ADC-like	8041345	3001132	SCOP2B (2022-06-29)
S [auth D]	SCOP2B Superfamily	4Fe-4S ferredoxins	8041348	3000020	SCOP2B (2022-06-29)
S [auth D]	SCOP2B Superfamily	Formate dehydrogenase/DMSO reductase, domains 1-3	8041346	3001453	SCOP2B (2022-06-29)
S [auth D]	SCOP2B Superfamily	2Fe-2S ferredoxin-like	8041347	3000113	SCOP2B (2022-06-29)
T [auth E]	SCOP2B Superfamily	HydB/Nqo4-like	8041349	3001849	SCOP2B (2022-06-29)
D [auth 4]	SCOP2B Superfamily	HydB/Nqo4-like	8041349	3001849	SCOP2B (2022-06-29)
F [auth 6]	SCOP2B Superfamily	Nqo6/HydA N-terminal domain-like	8041352	3002291	SCOP2B (2022-06-29)
V [auth G]	SCOP2B Superfamily	Nqo6/HydA N-terminal domain-like	8041352	3002291	SCOP2B (2022-06-29)
G [auth 9]	SCOP2B Superfamily	4Fe-4S ferredoxins	8041354	3000020	SCOP2B (2022-06-29)
W [auth O]	SCOP2B Superfamily	4Fe-4S ferredoxins	8041354	3000020	SCOP2B (2022-06-29)
H [auth 7]	SCOP2B Superfamily	Frataxin/Nqo15-like	8041353	3001840	SCOP2B (2022-06-29)
X [auth I]	SCOP2B Superfamily	Frataxin/Nqo15-like	8041353	3001840	SCOP2B (2022-06-29)
I [auth W]	SCOP2B Superfamily	TTHA1528-like	8033165	3001713	SCOP2B (2022-06-29)
Y [auth X]	SCOP2B Superfamily	TTHA1528-like	8033165	3001713	SCOP2B (2022-06-29)
J [auth A]	SCOP2B Superfamily	NADH-quinone oxidoreductase, subunit 11-like	8106702	3002200	SCOP2B (2022-06-29)
Z [auth P]	SCOP2B Superfamily	NADH-quinone oxidoreductase, subunit 11-like	8106702	3002200	SCOP2B (2022-06-29)
BA [auth S]	SCOP2 Family	NADH-quinone oxidoreductase NDH subunit 11-like	8047739	4005793	SCOP2 (2022-06-29)
BA [auth S]	SCOP2 Superfamily	NADH-quinone oxidoreductase, subunit 11-like	8053512	3002200	SCOP2 (2022-06-29)
L [auth K]	SCOP2B Superfamily	NADH-quinone oxidoreductase, subunit 11-like	8053512	3002200	SCOP2B (2022-06-29)
DA [auth U]	SCOP2 Family	ND4 antiporter-like subunits	8047672	4005749	SCOP2 (2022-06-29)
DA [auth U]	SCOP2 Superfamily	Antiporter subunits half-channel-like	8054163	3002280	SCOP2 (2022-06-29)
DA [auth U]	SCOP2 Superfamily	Antiporter subunits half-channel-like	8054162	3002280	SCOP2 (2022-06-29)
N [auth M]	SCOP2B Superfamily	Antiporter subunits half-channel-like	8054163	3002280	SCOP2B (2022-06-29)
N [auth M]	SCOP2B Superfamily	Antiporter subunits half-channel-like	8054162	3002280	SCOP2B (2022-06-29)
Q [auth B]	SCOP2B Superfamily	Nqo1C-terminal domain-like	8041340	3001171	SCOP2B (2022-06-29)
Q [auth B]	SCOP2B Superfamily	Nqo1 middle domain-like	8041342	3000871	SCOP2B (2022-06-29)
Q [auth B]	SCOP2B Superfamily	Nqo1 FMN-binding domain-like	8041341	3001265	SCOP2B (2022-06-29)
A [auth 1]	SCOP2B Superfamily	Nqo1 middle domain-like	8041342	3000871	SCOP2B (2022-06-29)
A [auth 1]	SCOP2B Superfamily	Nqo1 FMN-binding domain-like	8041341	3001265	SCOP2B (2022-06-29)
A [auth 1]	SCOP2B Superfamily	Nqo1C-terminal domain-like	8041340	3001171	SCOP2B (2022-06-29)
AA [auth R]	SCOP2 Family	NADH-quinone oxidoreductase NDH subunit 10-like	8047843	4005844	SCOP2 (2022-06-29)
AA [auth R]	SCOP2 Superfamily	NADH-quinone oxidoreductase, subunit 11-like	8053515	3002200	SCOP2 (2022-06-29)
K [auth J]	SCOP2B Superfamily	NADH-quinone oxidoreductase, subunit 11-like	8053515	3002200	SCOP2B (2022-06-29)
CA [auth T]	SCOP2 Family	ND5 antiporter-like subunits	8048047	4005931	SCOP2 (2022-06-29)
CA [auth T]	SCOP2 Superfamily	Antiporter subunits half-channel-like	8054164	3002280	SCOP2 (2022-06-29)
CA [auth T]	SCOP2 Superfamily	Antiporter subunits half-channel-like	8047669	3002280	SCOP2 (2022-06-29)
M [auth L]	SCOP2B Superfamily	Antiporter subunits half-channel-like	8047669	3002280	SCOP2B (2022-06-29)
M [auth L]	SCOP2B Superfamily	Antiporter subunits half-channel-like	8054164	3002280	SCOP2B (2022-06-29)
O [auth N]	SCOP2B Superfamily	Antiporter subunits half-channel-like	8054159	3002280	SCOP2B (2022-06-29)
O [auth N]	SCOP2B Superfamily	Antiporter subunits half-channel-like	8054158	3002280	SCOP2B (2022-06-29)
EA [auth V]	SCOP2B Superfamily	Antiporter subunits half-channel-like	8054158	3002280	SCOP2B (2022-06-29)
EA [auth V]	SCOP2B Superfamily	Antiporter subunits half-channel-like	8054159	3002280	SCOP2B (2022-06-29)
FA [auth Q]	SCOP2 Family	NADH-quinone oxidoreductase subunit 8-like	8047489	4005664	SCOP2 (2022-06-29)
FA [auth Q]	SCOP2 Superfamily	Antiporter subunits half-channel-like	8054148	3002280	SCOP2 (2022-06-29)
P [auth H]	SCOP2B Superfamily	Antiporter subunits half-channel-like	8054148	3002280	SCOP2B (2022-06-29)
R [auth C]	SCOP2B Superfamily	Thioredoxin-like	8041344	3000031	SCOP2B (2022-06-29)
B [auth 2]	SCOP2B Superfamily	Thioredoxin-like	8041344	3000031	SCOP2B (2022-06-29)
E [auth 5]	SCOP2B Superfamily	Nqo5-like	8041351	3001071	SCOP2B (2022-06-29)
U [auth F]	SCOP2B Superfamily	Nqo5-like	8041351	3001071	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C [auth 3]	Molydop_binding	e4hea38	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: double psi	F: Molydop_binding	ECOD (1.6)
C [auth 3]	PRK09129	e4hea37	A: a+b two layers	X: 4Fe-4S ferredoxin (From Topology)	H: 4Fe-4S ferredoxin (From Topology)	T: 4Fe-4S ferredoxin	F: PRK09129	ECOD (1.6)
C [auth 3]	Fer2_4	e4hea34	A: a+b two layers	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Fer2_4	ECOD (1.6)
C [auth 3]	Molybdop_Fe4S4	e4hea310	A: a+b two layers	X: Formate dehydrogenase/DMSO reductase, domain 1 (From Topology)	H: Formate dehydrogenase/DMSO reductase, domain 1 (From Topology)	T: Formate dehydrogenase/DMSO reductase, domain 1	F: Molybdop_Fe4S4	ECOD (1.6)
C [auth 3]	Molybdopterin_2nd	e4hea36	A: a/b three-layered sandwiches	X: Rossmann-like	H: Formate dehydrogenase/DMSO reductase, domains 2 and 3 (From Topology)	T: Formate dehydrogenase/DMSO reductase, domains 2 and 3	F: Molybdopterin_2nd	ECOD (1.6)
C [auth 3]	NuoG_2nd	e4hea35	A: a/b three-layered sandwiches	X: Rossmann-like	H: Formate dehydrogenase/DMSO reductase, domains 2 and 3 (From Topology)	T: Formate dehydrogenase/DMSO reductase, domains 2 and 3	F: NuoG_2nd	ECOD (1.6)
C [auth 3]	NADH-G_4Fe-4S_3	e4hea39	A: extended segments	X: iron-sulfur center-binding helical hairpin (From Topology)	H: iron-sulfur center-binding helical hairpin (From Topology)	T: iron-sulfur center-binding helical hairpin	F: NADH-G_4Fe-4S_3	ECOD (1.6)
S [auth D]	Molydop_binding	e4heaD13	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: double psi	F: Molydop_binding	ECOD (1.6)
S [auth D]	PRK09129	e4heaD12	A: a+b two layers	X: 4Fe-4S ferredoxin (From Topology)	H: 4Fe-4S ferredoxin (From Topology)	T: 4Fe-4S ferredoxin	F: PRK09129	ECOD (1.6)
S [auth D]	Fer2_4	e4heaD15	A: a+b two layers	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Fer2_4	ECOD (1.6)
S [auth D]	Molybdop_Fe4S4	e4heaD7	A: a+b two layers	X: Formate dehydrogenase/DMSO reductase, domain 1 (From Topology)	H: Formate dehydrogenase/DMSO reductase, domain 1 (From Topology)	T: Formate dehydrogenase/DMSO reductase, domain 1	F: Molybdop_Fe4S4	ECOD (1.6)
S [auth D]	Molybdopterin_2nd	e4heaD6	A: a/b three-layered sandwiches	X: Rossmann-like	H: Formate dehydrogenase/DMSO reductase, domains 2 and 3 (From Topology)	T: Formate dehydrogenase/DMSO reductase, domains 2 and 3	F: Molybdopterin_2nd	ECOD (1.6)
S [auth D]	NuoG_2nd	e4heaD5	A: a/b three-layered sandwiches	X: Rossmann-like	H: Formate dehydrogenase/DMSO reductase, domains 2 and 3 (From Topology)	T: Formate dehydrogenase/DMSO reductase, domains 2 and 3	F: NuoG_2nd	ECOD (1.6)
S [auth D]	NADH-G_4Fe-4S_3	e4heaD14	A: extended segments	X: iron-sulfur center-binding helical hairpin (From Topology)	H: iron-sulfur center-binding helical hairpin (From Topology)	T: iron-sulfur center-binding helical hairpin	F: NADH-G_4Fe-4S_3	ECOD (1.6)
T [auth E]	Complex1_49kDa_1st	e4heaE6	A: alpha complex topology	X: alpha-helical domain in nickel-iron hydrogenase, large subunit (From Topology)	H: alpha-helical domain in nickel-iron hydrogenase, large subunit (From Topology)	T: alpha-helical domain in nickel-iron hydrogenase, large subunit	F: Complex1_49kDa_1st	ECOD (1.6)
T [auth E]	NuoD	e4heaE5	A: a+b two layers	X: FAD-linked reductases, C-terminal domain-like	H: Ni-Fe binding domain in nickel-iron hydrogenase large subunit (From Topology)	T: Ni-Fe binding domain in nickel-iron hydrogenase large subunit	F: NuoD	ECOD (1.6)
T [auth E]	Complex1_49kDa_2nd	e4heaE4	A: a+b two layers	X: FAD-linked reductases, C-terminal domain-like	H: Ni-Fe binding domain in nickel-iron hydrogenase large subunit (From Topology)	T: Ni-Fe binding domain in nickel-iron hydrogenase large subunit	F: Complex1_49kDa_2nd	ECOD (1.6)
D [auth 4]	Complex1_49kDa_1st	e4hea41	A: alpha complex topology	X: alpha-helical domain in nickel-iron hydrogenase, large subunit (From Topology)	H: alpha-helical domain in nickel-iron hydrogenase, large subunit (From Topology)	T: alpha-helical domain in nickel-iron hydrogenase, large subunit	F: Complex1_49kDa_1st	ECOD (1.6)
D [auth 4]	NuoD	e4hea42	A: a+b two layers	X: FAD-linked reductases, C-terminal domain-like	H: Ni-Fe binding domain in nickel-iron hydrogenase large subunit (From Topology)	T: Ni-Fe binding domain in nickel-iron hydrogenase large subunit	F: NuoD	ECOD (1.6)
D [auth 4]	Complex1_49kDa_2nd	e4hea43	A: a+b two layers	X: FAD-linked reductases, C-terminal domain-like	H: Ni-Fe binding domain in nickel-iron hydrogenase large subunit (From Topology)	T: Ni-Fe binding domain in nickel-iron hydrogenase large subunit	F: Complex1_49kDa_2nd	ECOD (1.6)
F [auth 6]	Oxidored_q6	e4hea61	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Class I glutamine amidotransferase-like	T: CheY-like	F: Oxidored_q6	ECOD (1.6)
V [auth G]	Oxidored_q6	e4heaG2	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Class I glutamine amidotransferase-like	T: CheY-like	F: Oxidored_q6	ECOD (1.6)
G [auth 9]	Fer4_21_1	e4hea91	A: a+b two layers	X: 4Fe-4S ferredoxin (From Topology)	H: 4Fe-4S ferredoxin (From Topology)	T: 4Fe-4S ferredoxin	F: Fer4_21_1	ECOD (1.6)
W [auth O]	Fer4_21_1	e4heaO1	A: a+b two layers	X: 4Fe-4S ferredoxin (From Topology)	H: 4Fe-4S ferredoxin (From Topology)	T: 4Fe-4S ferredoxin	F: Fer4_21_1	ECOD (1.6)
H [auth 7]	NADH_Oxid_Nqo15	e4hea71	A: a+b two layers	X: Type III secretory system chaperone-like	H: Frataxin-like (From Topology)	T: Frataxin-like	F: NADH_Oxid_Nqo15	ECOD (1.6)
X [auth I]	NADH_Oxid_Nqo15	e4heaI1	A: a+b two layers	X: Type III secretory system chaperone-like	H: Frataxin-like (From Topology)	T: Frataxin-like	F: NADH_Oxid_Nqo15	ECOD (1.6)
I [auth W]	DUF3197	e4heaW1	A: a+b two layers	X: TTHA1528-like	H: TTHA1528-like (From Topology)	T: TTHA1528-like	F: DUF3197	ECOD (1.6)
Y [auth X]	DUF3197	e4heaX1	A: a+b two layers	X: TTHA1528-like	H: TTHA1528-like (From Topology)	T: TTHA1528-like	F: DUF3197	ECOD (1.6)
J [auth A]	Oxidored_q4	e4heaA1	A: extended segments	X: NADH-quinone oxidoreductase subunit A (From Topology)	H: NADH-quinone oxidoreductase subunit A (From Topology)	T: NADH-quinone oxidoreductase subunit A	F: Oxidored_q4	ECOD (1.6)
Z [auth P]	Oxidored_q4	e4heaP1	A: extended segments	X: NADH-quinone oxidoreductase subunit A (From Topology)	H: NADH-quinone oxidoreductase subunit A (From Topology)	T: NADH-quinone oxidoreductase subunit A	F: Oxidored_q4	ECOD (1.6)
BA [auth S]	Oxidored_q2	e4heaS1	A: alpha complex topology	X: NADH-quinone oxidoreductase subunit K (From Topology)	H: NADH-quinone oxidoreductase subunit K (From Topology)	T: NADH-quinone oxidoreductase subunit K	F: Oxidored_q2	ECOD (1.6)
L [auth K]	Oxidored_q2	e4heaK1	A: alpha complex topology	X: NADH-quinone oxidoreductase subunit K (From Topology)	H: NADH-quinone oxidoreductase subunit K (From Topology)	T: NADH-quinone oxidoreductase subunit K	F: Oxidored_q2	ECOD (1.6)
DA [auth U]	Proton_antipo_M	e4heaU1	A: alpha complex topology	X: Sodium/proton antiporter subunits-like (From Homology)	H: Sodium/proton antiporter subunits-like	T: NADH-quinone oxidoreductase subunit L (NuoL)-related	F: Proton_antipo_M	ECOD (1.6)
N [auth M]	Proton_antipo_M	e4heaM1	A: alpha complex topology	X: Sodium/proton antiporter subunits-like (From Homology)	H: Sodium/proton antiporter subunits-like	T: NADH-quinone oxidoreductase subunit L (NuoL)-related	F: Proton_antipo_M	ECOD (1.6)
Q [auth B]	NADH_4Fe-4S	e4heaB1	A: alpha bundles	X: Bromodomain-like	H: Nqo1C-terminal domain-like (From Topology)	T: Nqo1C-terminal domain-like	F: NADH_4Fe-4S	ECOD (1.6)
Q [auth B]	SLBB	e4heaB2	A: a+b two layers	X: beta-Grasp	H: Ubiquitin-related	T: Nqo1 middle domain-like	F: SLBB	ECOD (1.6)
Q [auth B]	Complex1_51K	e4heaB3	A: a/b three-layered sandwiches	X: Nqo1 FMN-binding domain-like (From Topology)	H: Nqo1 FMN-binding domain-like (From Topology)	T: Nqo1 FMN-binding domain-like	F: Complex1_51K	ECOD (1.6)
A [auth 1]	NADH_4Fe-4S	e4hea11	A: alpha bundles	X: Bromodomain-like	H: Nqo1C-terminal domain-like (From Topology)	T: Nqo1C-terminal domain-like	F: NADH_4Fe-4S	ECOD (1.6)
A [auth 1]	SLBB	e4hea12	A: a+b two layers	X: beta-Grasp	H: Ubiquitin-related	T: Nqo1 middle domain-like	F: SLBB	ECOD (1.6)
A [auth 1]	Complex1_51K	e4hea13	A: a/b three-layered sandwiches	X: Nqo1 FMN-binding domain-like (From Topology)	H: Nqo1 FMN-binding domain-like (From Topology)	T: Nqo1 FMN-binding domain-like	F: Complex1_51K	ECOD (1.6)
AA [auth R]	Oxidored_q3	e4heaR1	A: extended segments	X: NADH-quinone oxidoreductase subunit J (From Topology)	H: NADH-quinone oxidoreductase subunit J (From Topology)	T: NADH-quinone oxidoreductase subunit J	F: Oxidored_q3	ECOD (1.6)
K [auth J]	Oxidored_q3	e4heaJ1	A: extended segments	X: NADH-quinone oxidoreductase subunit J (From Topology)	H: NADH-quinone oxidoreductase subunit J (From Topology)	T: NADH-quinone oxidoreductase subunit J	F: Oxidored_q3	ECOD (1.6)
CA [auth T]	Proton_antipo_M	e4heaT1	A: alpha complex topology	X: Sodium/proton antiporter subunits-like (From Homology)	H: Sodium/proton antiporter subunits-like	T: NADH-quinone oxidoreductase subunit L (NuoL)-related	F: Proton_antipo_M	ECOD (1.6)
M [auth L]	Proton_antipo_M	e4heaL1	A: alpha complex topology	X: Sodium/proton antiporter subunits-like (From Homology)	H: Sodium/proton antiporter subunits-like	T: NADH-quinone oxidoreductase subunit L (NuoL)-related	F: Proton_antipo_M	ECOD (1.6)
O [auth N]	Proton_antipo_M	e4heaN1	A: alpha complex topology	X: Sodium/proton antiporter subunits-like (From Homology)	H: Sodium/proton antiporter subunits-like	T: NADH-quinone oxidoreductase subunit L (NuoL)-related	F: Proton_antipo_M	ECOD (1.6)
EA [auth V]	Proton_antipo_M	e4heaV1	A: alpha complex topology	X: Sodium/proton antiporter subunits-like (From Homology)	H: Sodium/proton antiporter subunits-like	T: NADH-quinone oxidoreductase subunit L (NuoL)-related	F: Proton_antipo_M	ECOD (1.6)
FA [auth Q]	NADHdh	e4heaQ1	A: alpha complex topology	X: Sodium/proton antiporter subunits-like (From Homology)	H: Sodium/proton antiporter subunits-like	T: NADH-quinone oxidoreductase subunit 8 (Nqo8)-related	F: NADHdh	ECOD (1.6)
P [auth H]	NADHdh	e4heaH1	A: alpha complex topology	X: Sodium/proton antiporter subunits-like (From Homology)	H: Sodium/proton antiporter subunits-like	T: NADH-quinone oxidoreductase subunit 8 (Nqo8)-related	F: NADHdh	ECOD (1.6)
R [auth C]	2Fe-2S_thioredx_N	e4heaC2	A: alpha bundles	X: NQO2 helical bundle domain (From Topology)	H: NQO2 helical bundle domain (From Topology)	T: NQO2 helical bundle domain	F: 2Fe-2S_thioredx_N	ECOD (1.6)
R [auth C]	2Fe-2S_thioredx_C	e4heaC1	A: a+b three layers	X: Thioredoxin-like	H: Thioredoxin-like (From Topology)	T: Thioredoxin-like	F: 2Fe-2S_thioredx_C	ECOD (1.6)
B [auth 2]	2Fe-2S_thioredx_N	e4hea22	A: alpha bundles	X: NQO2 helical bundle domain (From Topology)	H: NQO2 helical bundle domain (From Topology)	T: NQO2 helical bundle domain	F: 2Fe-2S_thioredx_N	ECOD (1.6)
B [auth 2]	2Fe-2S_thioredx_C	e4hea21	A: a+b three layers	X: Thioredoxin-like	H: Thioredoxin-like (From Topology)	T: Thioredoxin-like	F: 2Fe-2S_thioredx_C	ECOD (1.6)
E [auth 5]	Complex1_30kDa	e4hea51	A: a+b two layers	X: Nqo5-like	H: Nqo5-like (From Topology)	T: Nqo5-like	F: Complex1_30kDa	ECOD (1.6)
U [auth F]	Complex1_30kDa	e4heaF1	A: a+b two layers	X: Nqo5-like	H: Nqo5-like (From Topology)	T: Nqo5-like	F: Complex1_30kDa	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
T [auth E]	1.10.645.10	Mainly Alpha	Orthogonal Bundle	Cytochrome-c3 Hydrogenase	chain B	CATH (4.3.0)
D [auth 4]	1.10.645.10	Mainly Alpha	Orthogonal Bundle	Cytochrome-c3 Hydrogenase	chain B	CATH (4.3.0)
F [auth 6]	3.40.50.12280	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold		CATH (4.3.0)
V [auth G]	3.40.50.12280	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold		CATH (4.3.0)
G [auth 9]	3.30.70.3270	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits		CATH (4.3.0)
W [auth O]	3.30.70.3270	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits		CATH (4.3.0)
H [auth 7]	3.30.920.80	Alpha Beta	2-Layer Sandwich	Metal Transport, Frataxin	Chain A	CATH (4.3.0)
X [auth I]	3.30.920.80	Alpha Beta	2-Layer Sandwich	Metal Transport, Frataxin	Chain A	CATH (4.3.0)
I [auth W]	3.40.1530.10	Alpha Beta	3-Layer(aba) Sandwich	hypothetical protein tt1805	TTHA1528-like	CATH (4.3.0)
Y [auth X]	3.40.1530.10	Alpha Beta	3-Layer(aba) Sandwich	hypothetical protein tt1805	TTHA1528-like	CATH (4.3.0)
J [auth A]	1.20.58.1610	Mainly Alpha	Up-down Bundle	Methane Monooxygenase Hydroxylase	Chain G, domain 1	CATH (4.3.0)
Z [auth P]	1.20.58.1610	Mainly Alpha	Up-down Bundle	Methane Monooxygenase Hydroxylase	Chain G, domain 1	CATH (4.3.0)
BA [auth S]	1.10.287.3510	Mainly Alpha	Orthogonal Bundle	Helix Hairpins		CATH (4.3.0)
L [auth K]	1.10.287.3510	Mainly Alpha	Orthogonal Bundle	Helix Hairpins		CATH (4.3.0)
Q [auth B]	6.10.250.1450	Special	Helix non-globular	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
Q [auth B]	3.40.50.11540	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NADH-ubiquinone oxidoreductase 51kDa subunit	CATH (4.3.0)
Q [auth B]	3.10.20.600	Alpha Beta	Roll	Ubiquitin-like (UB roll)		CATH (4.3.0)
Q [auth B]	1.20.1440.230	Mainly Alpha	Up-down Bundle	de novo design (two linked rop proteins)	NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain	CATH (4.3.0)
A [auth 1]	6.10.250.1450	Special	Helix non-globular	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
A [auth 1]	3.40.50.11540	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NADH-ubiquinone oxidoreductase 51kDa subunit	CATH (4.3.0)
A [auth 1]	3.10.20.600	Alpha Beta	Roll	Ubiquitin-like (UB roll)		CATH (4.3.0)
A [auth 1]	1.20.1440.230	Mainly Alpha	Up-down Bundle	de novo design (two linked rop proteins)	NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain	CATH (4.3.0)
AA [auth R]	1.20.120.1200	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)	NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ	CATH (4.3.0)
K [auth J]	1.20.120.1200	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)	NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ	CATH (4.3.0)
CA [auth T]	1.20.5.2700	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
M [auth L]	1.20.5.2700	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
R [auth C]	1.10.10.1590	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	NADH-quinone oxidoreductase subunit E	CATH (4.3.0)
R [auth C]	3.40.30.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	Glutaredoxin	CATH (4.3.0)
B [auth 2]	1.10.10.1590	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	NADH-quinone oxidoreductase subunit E	CATH (4.3.0)
B [auth 2]	3.40.30.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	Glutaredoxin	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
C [auth 3], S [auth D]	PF01568	Molydopterin dinucleotide binding domain (Molydop_binding)	Molydopterin dinucleotide binding domain	This domain is found in various molybdopterin - containing oxidoreductases and tungsten formylmethanofuran dehydrogenase subunit d (FwdD) and molybdenum formylmethanofuran dehydrogenase subunit (FmdD); where the domain constitutes almost the entir ...	This domain is found in various molybdopterin - containing oxidoreductases and tungsten formylmethanofuran dehydrogenase subunit d (FwdD) and molybdenum formylmethanofuran dehydrogenase subunit (FmdD); where the domain constitutes almost the entire subunit. The formylmethanofuran dehydrogenase catalyses the first step in methane formation from CO2 in methanogenic archaea and has a molybdopterin dinucleotide cofactor [1]. This domain corresponds to the C-terminal domain IV in dimethyl sulfoxide (DMSO)reductase which interacts with the 2-amino pyrimidone ring of both molybdopterin guanine dinucleotide molecules [2].	Domain
C [auth 3], S [auth D]	PF04879	Molybdopterin oxidoreductase Fe4S4 domain (Molybdop_Fe4S4)	Molybdopterin oxidoreductase Fe4S4 domain	This domain is found in formate dehydrogenase H for which the structure is known. This first domain (residues 1 to 60) of PDB:1aa6 is an Fe4S4 cluster just below the protein surface [1].	Domain
C [auth 3], S [auth D]	PF00384	Molybdopterin oxidoreductase (Molybdopterin)	Molybdopterin oxidoreductase	-	Family
C [auth 3], S [auth D]	PF00111	2Fe-2S iron-sulfur cluster binding domain (Fer2)	2Fe-2S iron-sulfur cluster binding domain	-	Domain
C [auth 3], S [auth D]	PF22117	NADH-quinone oxidoreductase subunit 3, ferredoxin-like domain (Nqo3_Fer4)	NADH-quinone oxidoreductase subunit 3, ferredoxin-like domain	NADH-quinone oxidoreductase subunit 3 (Nqo3) is a component of respiratory complex I. This protein is located at the peripheral arm of the complex and consists of multiple domains. This entry represents the second ferredoxin-like domain which contain ...	NADH-quinone oxidoreductase subunit 3 (Nqo3) is a component of respiratory complex I. This protein is located at the peripheral arm of the complex and consists of multiple domains. This entry represents the second ferredoxin-like domain which contains Fe4-S4 cluster, one of the redox centers of the complex [1-5].	Domain
C [auth 3], S [auth D]	PF10588	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region (NADH-G_4Fe-4S_3)	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region	-	Domain
D [auth 4], T [auth E]	PF00346	Respiratory-chain NADH dehydrogenase, 49 Kd subunit (Complex1_49kDa)	Respiratory-chain NADH dehydrogenase, 49 Kd subunit	-	Family
F [auth 6], V [auth G]	PF01058	NADH ubiquinone oxidoreductase, 20 Kd subunit (Oxidored_q6)	NADH ubiquinone oxidoreductase, 20 Kd subunit	-	Family
G [auth 9], W [auth O]	PF00037	4Fe-4S binding domain (Fer4)	4Fe-4S binding domain	Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich.	Domain
H [auth 7], X [auth I]	PF11497	NADH-quinone oxidoreductase chain 15 (NADH_Oxid_Nqo15)	NADH-quinone oxidoreductase chain 15	-	Family
I [auth W], Y [auth X]	PF11432	Protein of unknown function (DUF3197) (DUF3197)	Protein of unknown function (DUF3197)	-	Family
J [auth A], Z [auth P]	PF00507	NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 (Oxidored_q4)	NADH-ubiquinone/plastoquinone oxidoreductase, chain 3	-	Family
BA [auth S], L [auth K]	PF00420	NADH-ubiquinone/plastoquinone oxidoreductase chain 4L (Oxidored_q2)	NADH-ubiquinone/plastoquinone oxidoreductase chain 4L	-	Family
DA [auth U], N [auth M]	PF00361	Proton-conducting membrane transporter (Proton_antipo_M)	Proton-conducting membrane transporter	-	Family
A [auth 1], Q [auth B]	PF10531	SLBB domain (SLBB)	SLBB domain	-	Domain
A [auth 1], Q [auth B]	PF22461	SLBB domain (SLBB_2)	SLBB domain	This entry represents a set of SLBB domains [5].	Domain
A [auth 1], Q [auth B]	PF01512	Respiratory-chain NADH dehydrogenase 51 Kd subunit (Complex1_51K)	Respiratory-chain NADH dehydrogenase 51 Kd subunit	-	Family
A [auth 1], Q [auth B]	PF10589	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region (NADH_4Fe-4S)	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region	-	Domain
AA [auth R], K [auth J]	PF00499	NADH-ubiquinone/plastoquinone oxidoreductase chain 6 (Oxidored_q3)	NADH-ubiquinone/plastoquinone oxidoreductase chain 6	-	Family
CA [auth T], M [auth L]	PF00361	Proton-conducting membrane transporter (Proton_antipo_M)	Proton-conducting membrane transporter	-	Family
CA [auth T], M [auth L]	PF00662	NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus (Proton_antipo_N)	NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus	-	Family
EA [auth V], O [auth N]	PF00361	Proton-conducting membrane transporter (Proton_antipo_M)	Proton-conducting membrane transporter	-	Family
FA [auth Q], P [auth H]	PF00146	NADH dehydrogenase (NADHdh)	NADH dehydrogenase	-	Family
B [auth 2], R [auth C]	PF01257	Thioredoxin-like [2Fe-2S] ferredoxin (2Fe-2S_thioredx)	Thioredoxin-like [2Fe-2S] ferredoxin	-	Family
E [auth 5], U [auth F]	PF00329	Respiratory-chain NADH dehydrogenase, 30 Kd subunit (Complex1_30kDa)	Respiratory-chain NADH dehydrogenase, 30 Kd subunit	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C [auth 3], S [auth D]	NADH-quinone oxidoreductase subunit 3	iron-sulfur cluster binding 2 iron, 2 sulfur cluster binding binding metal cluster binding small molecule binding monoatomic cation transmembrane transporter activity proton transmembrane transporter activity primary active transmembrane transporter activity oxidoreductase activity, acting on NAD(P)H oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor electron transfer activity active monoatomic ion transmembrane transporter activity oxidoreductase activity NADH dehydrogenase (ubiquinone) activity iron-sulfur cluster binding 2 iron, 2 sulfur cluster binding binding metal cluster binding small molecule binding monoatomic cation transmembrane transporter activity proton transmembrane transporter activity primary active transmembrane transporter activity oxidoreductase activity, acting on NAD(P)H oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor electron transfer activity active monoatomic ion transmembrane transporter activity oxidoreductase activity NADH dehydrogenase (ubiquinone) activity oxidoreduction-driven active transmembrane transporter activity active transmembrane transporter activity inorganic molecular entity transmembrane transporter activity inorganic cation transmembrane transporter activity monoatomic ion transmembrane transporter activity transporter activity transmembrane transporter activity catalytic activity quinone binding organic cyclic compound binding molybdopterin cofactor binding 4 iron, 4 sulfur cluster binding cation binding ion binding metal ion binding	aerobic respiration cellular respiration oxidative phosphorylation energy derivation by oxidation of organic compounds cellular metabolic process ATP synthesis coupled electron transport electron transport chain generation of precursor metabolites and energy respiratory electron transport chain metabolic process cellular process	cell periphery plasma membrane membrane cellular anatomical entity
D [auth 4], T [auth E]	NADH-quinone oxidoreductase subunit 4	oxidoreductase activity NADH:ubiquinone reductase (non-electrogenic) activity oxidoreductase activity, acting on NAD(P)H catalytic activity oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor NADH dehydrogenase activity NAD binding binding nucleoside phosphate binding purine nucleotide binding organic cyclic compound binding adenyl nucleotide binding nucleotide binding heterocyclic compound binding oxidoreductase activity NADH:ubiquinone reductase (non-electrogenic) activity oxidoreductase activity, acting on NAD(P)H catalytic activity oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor NADH dehydrogenase activity NAD binding binding nucleoside phosphate binding purine nucleotide binding organic cyclic compound binding adenyl nucleotide binding nucleotide binding heterocyclic compound binding small molecule binding quinone binding	-	cell periphery plasma membrane membrane cellular anatomical entity
F [auth 6], V [auth G]	NADH-quinone oxidoreductase subunit 6	oxidoreductase activity NADH:ubiquinone reductase (non-electrogenic) activity oxidoreductase activity, acting on NAD(P)H catalytic activity oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor NADH dehydrogenase activity iron-sulfur cluster binding binding 4 iron, 4 sulfur cluster binding metal cluster binding small molecule binding cation binding transition metal ion binding iron ion binding oxidoreductase activity NADH:ubiquinone reductase (non-electrogenic) activity oxidoreductase activity, acting on NAD(P)H catalytic activity oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor NADH dehydrogenase activity iron-sulfur cluster binding binding 4 iron, 4 sulfur cluster binding metal cluster binding small molecule binding cation binding transition metal ion binding iron ion binding ion binding metal ion binding monoatomic cation transmembrane transporter activity proton transmembrane transporter activity primary active transmembrane transporter activity electron transfer activity active monoatomic ion transmembrane transporter activity NADH dehydrogenase (ubiquinone) activity oxidoreduction-driven active transmembrane transporter activity active transmembrane transporter activity inorganic molecular entity transmembrane transporter activity inorganic cation transmembrane transporter activity monoatomic ion transmembrane transporter activity transporter activity transmembrane transporter activity quinone binding	-	cell periphery plasma membrane membrane cellular anatomical entity
G [auth 9], W [auth O]	NADH-quinone oxidoreductase subunit 9	oxidoreductase activity NADH:ubiquinone reductase (non-electrogenic) activity oxidoreductase activity, acting on NAD(P)H catalytic activity oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor NADH dehydrogenase activity iron-sulfur cluster binding binding 4 iron, 4 sulfur cluster binding metal cluster binding small molecule binding cation binding transition metal ion binding iron ion binding oxidoreductase activity NADH:ubiquinone reductase (non-electrogenic) activity oxidoreductase activity, acting on NAD(P)H catalytic activity oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor NADH dehydrogenase activity iron-sulfur cluster binding binding 4 iron, 4 sulfur cluster binding metal cluster binding small molecule binding cation binding transition metal ion binding iron ion binding ion binding metal ion binding quinone binding	-	cell periphery plasma membrane membrane cellular anatomical entity
H [auth 7], X [auth I]	NADH-quinone oxidoreductase subunit 15	cation binding ferric iron binding transition metal ion binding iron ion binding ion binding binding metal ion binding small molecule binding quinone binding	cellular component biogenesis cellular component organization metallo-sulfur cluster assembly cellular component assembly iron-sulfur cluster assembly cellular process cellular component organization or biogenesis	cell periphery plasma membrane membrane cellular anatomical entity
I [auth W], Y [auth X]	Putative uncharacterized protein TTHA1528	-	-	-
J [auth A], Z [auth P]	NADH-quinone oxidoreductase subunit 7	oxidoreductase activity NADH:ubiquinone reductase (non-electrogenic) activity oxidoreductase activity, acting on NAD(P)H catalytic activity oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor NADH dehydrogenase activity monoatomic cation transmembrane transporter activity proton transmembrane transporter activity primary active transmembrane transporter activity electron transfer activity active monoatomic ion transmembrane transporter activity NADH dehydrogenase (ubiquinone) activity oxidoreduction-driven active transmembrane transporter activity active transmembrane transporter activity oxidoreductase activity NADH:ubiquinone reductase (non-electrogenic) activity oxidoreductase activity, acting on NAD(P)H catalytic activity oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor NADH dehydrogenase activity monoatomic cation transmembrane transporter activity proton transmembrane transporter activity primary active transmembrane transporter activity electron transfer activity active monoatomic ion transmembrane transporter activity NADH dehydrogenase (ubiquinone) activity oxidoreduction-driven active transmembrane transporter activity active transmembrane transporter activity inorganic molecular entity transmembrane transporter activity inorganic cation transmembrane transporter activity monoatomic ion transmembrane transporter activity transporter activity transmembrane transporter activity binding quinone binding small molecule binding	-	cell periphery plasma membrane membrane cellular anatomical entity
BA [auth S], L [auth K]	NADH-quinone oxidoreductase subunit 11	oxidoreductase activity NADH:ubiquinone reductase (non-electrogenic) activity oxidoreductase activity, acting on NAD(P)H catalytic activity oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor NADH dehydrogenase activity binding quinone binding small molecule binding	aerobic respiration cellular respiration oxidative phosphorylation energy derivation by oxidation of organic compounds cellular metabolic process ATP synthesis coupled electron transport electron transport chain generation of precursor metabolites and energy respiratory electron transport chain metabolic process cellular process	cell periphery plasma membrane membrane cellular anatomical entity
DA [auth U], N [auth M]	NADH-quinone oxidoreductase subunit 13	monoatomic cation transmembrane transporter activity proton transmembrane transporter activity primary active transmembrane transporter activity oxidoreductase activity, acting on NAD(P)H oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor electron transfer activity active monoatomic ion transmembrane transporter activity oxidoreductase activity NADH dehydrogenase (ubiquinone) activity oxidoreduction-driven active transmembrane transporter activity active transmembrane transporter activity inorganic molecular entity transmembrane transporter activity inorganic cation transmembrane transporter activity monoatomic ion transmembrane transporter activity transporter activity monoatomic cation transmembrane transporter activity proton transmembrane transporter activity primary active transmembrane transporter activity oxidoreductase activity, acting on NAD(P)H oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor electron transfer activity active monoatomic ion transmembrane transporter activity oxidoreductase activity NADH dehydrogenase (ubiquinone) activity oxidoreduction-driven active transmembrane transporter activity active transmembrane transporter activity inorganic molecular entity transmembrane transporter activity inorganic cation transmembrane transporter activity monoatomic ion transmembrane transporter activity transporter activity transmembrane transporter activity catalytic activity binding quinone binding small molecule binding	aerobic respiration cellular respiration oxidative phosphorylation energy derivation by oxidation of organic compounds cellular metabolic process ATP synthesis coupled electron transport electron transport chain generation of precursor metabolites and energy respiratory electron transport chain metabolic process cellular process	cell periphery plasma membrane membrane cellular anatomical entity
A [auth 1], Q [auth B]	NADH-quinone oxidoreductase subunit 1	binding nucleotide binding FMN binding nucleoside phosphate binding ion binding organic cyclic compound binding anion binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding monoatomic cation transmembrane transporter activity proton transmembrane transporter activity primary active transmembrane transporter activity binding nucleotide binding FMN binding nucleoside phosphate binding ion binding organic cyclic compound binding anion binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding monoatomic cation transmembrane transporter activity proton transmembrane transporter activity primary active transmembrane transporter activity oxidoreductase activity, acting on NAD(P)H oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor electron transfer activity active monoatomic ion transmembrane transporter activity oxidoreductase activity NADH dehydrogenase (ubiquinone) activity oxidoreduction-driven active transmembrane transporter activity active transmembrane transporter activity inorganic molecular entity transmembrane transporter activity inorganic cation transmembrane transporter activity monoatomic ion transmembrane transporter activity transporter activity transmembrane transporter activity catalytic activity quinone binding NAD binding purine nucleotide binding adenyl nucleotide binding iron-sulfur cluster binding 4 iron, 4 sulfur cluster binding metal cluster binding cation binding metal ion binding	-	respiratory chain complex protein-containing complex catalytic complex membrane membrane protein complex cellular anatomical entity transporter complex NADH dehydrogenase complex transmembrane transporter complex respiratory chain complex I oxidoreductase complex cell periphery plasma membrane
AA [auth R], K [auth J]	NADH-quinone oxidoreductase subunit 10	monoatomic cation transmembrane transporter activity proton transmembrane transporter activity primary active transmembrane transporter activity oxidoreductase activity, acting on NAD(P)H oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor electron transfer activity active monoatomic ion transmembrane transporter activity oxidoreductase activity NADH dehydrogenase (ubiquinone) activity oxidoreduction-driven active transmembrane transporter activity active transmembrane transporter activity inorganic molecular entity transmembrane transporter activity inorganic cation transmembrane transporter activity monoatomic ion transmembrane transporter activity transporter activity monoatomic cation transmembrane transporter activity proton transmembrane transporter activity primary active transmembrane transporter activity oxidoreductase activity, acting on NAD(P)H oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor electron transfer activity active monoatomic ion transmembrane transporter activity oxidoreductase activity NADH dehydrogenase (ubiquinone) activity oxidoreduction-driven active transmembrane transporter activity active transmembrane transporter activity inorganic molecular entity transmembrane transporter activity inorganic cation transmembrane transporter activity monoatomic ion transmembrane transporter activity transporter activity transmembrane transporter activity catalytic activity binding quinone binding small molecule binding	-	cell periphery plasma membrane membrane cellular anatomical entity
CA [auth T], M [auth L]	NADH-quinone oxidoreductase subunit 12	monoatomic cation transmembrane transporter activity proton transmembrane transporter activity primary active transmembrane transporter activity oxidoreductase activity, acting on NAD(P)H oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor electron transfer activity active monoatomic ion transmembrane transporter activity oxidoreductase activity NADH dehydrogenase (ubiquinone) activity oxidoreduction-driven active transmembrane transporter activity active transmembrane transporter activity inorganic molecular entity transmembrane transporter activity inorganic cation transmembrane transporter activity monoatomic ion transmembrane transporter activity transporter activity monoatomic cation transmembrane transporter activity proton transmembrane transporter activity primary active transmembrane transporter activity oxidoreductase activity, acting on NAD(P)H oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor electron transfer activity active monoatomic ion transmembrane transporter activity oxidoreductase activity NADH dehydrogenase (ubiquinone) activity oxidoreduction-driven active transmembrane transporter activity active transmembrane transporter activity inorganic molecular entity transmembrane transporter activity inorganic cation transmembrane transporter activity monoatomic ion transmembrane transporter activity transporter activity transmembrane transporter activity catalytic activity binding quinone binding small molecule binding	aerobic respiration cellular respiration oxidative phosphorylation energy derivation by oxidation of organic compounds cellular metabolic process ATP synthesis coupled electron transport electron transport chain generation of precursor metabolites and energy respiratory electron transport chain metabolic process cellular process	cell periphery plasma membrane membrane cellular anatomical entity
EA [auth V], O [auth N]	NADH-quinone oxidoreductase subunit 14	oxidoreductase activity NADH:ubiquinone reductase (non-electrogenic) activity oxidoreductase activity, acting on NAD(P)H catalytic activity oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor NADH dehydrogenase activity monoatomic cation transmembrane transporter activity proton transmembrane transporter activity primary active transmembrane transporter activity electron transfer activity active monoatomic ion transmembrane transporter activity NADH dehydrogenase (ubiquinone) activity oxidoreduction-driven active transmembrane transporter activity active transmembrane transporter activity oxidoreductase activity NADH:ubiquinone reductase (non-electrogenic) activity oxidoreductase activity, acting on NAD(P)H catalytic activity oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor NADH dehydrogenase activity monoatomic cation transmembrane transporter activity proton transmembrane transporter activity primary active transmembrane transporter activity electron transfer activity active monoatomic ion transmembrane transporter activity NADH dehydrogenase (ubiquinone) activity oxidoreduction-driven active transmembrane transporter activity active transmembrane transporter activity inorganic molecular entity transmembrane transporter activity inorganic cation transmembrane transporter activity monoatomic ion transmembrane transporter activity transporter activity transmembrane transporter activity binding quinone binding small molecule binding	aerobic respiration cellular respiration oxidative phosphorylation energy derivation by oxidation of organic compounds cellular metabolic process ATP synthesis coupled electron transport electron transport chain generation of precursor metabolites and energy respiratory electron transport chain metabolic process cellular process	cell periphery plasma membrane membrane cellular anatomical entity
FA [auth Q], P [auth H]	NADH-quinone oxidoreductase subunit 8	oxidoreductase activity oxidoreductase activity, acting on NAD(P)H oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor catalytic activity binding quinone binding small molecule binding	-	cell periphery plasma membrane membrane cellular anatomical entity
B [auth 2], R [auth C]	NADH-quinone oxidoreductase subunit 2	oxidoreductase activity catalytic activity iron-sulfur cluster binding 2 iron, 2 sulfur cluster binding binding metal cluster binding small molecule binding cation binding ion binding metal ion binding quinone binding	-	respiratory chain complex protein-containing complex catalytic complex membrane membrane protein complex cellular anatomical entity transporter complex NADH dehydrogenase complex transmembrane transporter complex respiratory chain complex I oxidoreductase complex cell periphery plasma membrane
E [auth 5], U [auth F]	NADH-quinone oxidoreductase subunit 5	oxidoreductase activity NADH:ubiquinone reductase (non-electrogenic) activity oxidoreductase activity, acting on NAD(P)H catalytic activity oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor NADH dehydrogenase activity monoatomic cation transmembrane transporter activity proton transmembrane transporter activity primary active transmembrane transporter activity electron transfer activity active monoatomic ion transmembrane transporter activity NADH dehydrogenase (ubiquinone) activity oxidoreduction-driven active transmembrane transporter activity active transmembrane transporter activity oxidoreductase activity NADH:ubiquinone reductase (non-electrogenic) activity oxidoreductase activity, acting on NAD(P)H catalytic activity oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor NADH dehydrogenase activity monoatomic cation transmembrane transporter activity proton transmembrane transporter activity primary active transmembrane transporter activity electron transfer activity active monoatomic ion transmembrane transporter activity NADH dehydrogenase (ubiquinone) activity oxidoreduction-driven active transmembrane transporter activity active transmembrane transporter activity inorganic molecular entity transmembrane transporter activity inorganic cation transmembrane transporter activity monoatomic ion transmembrane transporter activity transporter activity transmembrane transporter activity binding quinone binding small molecule binding	-	cell periphery plasma membrane membrane cellular anatomical entity

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C [auth 3], S [auth D]	IPR006963	Molybdopterin oxidoreductase, 4Fe-4S domain	Domain
C [auth 3], S [auth D]	IPR006657	Molybdopterin dinucleotide-binding domain	Domain
C [auth 3], S [auth D]	IPR001387	Cro/C1-type helix-turn-helix domain	Domain
C [auth 3], S [auth D]	IPR006656	Molybdopterin oxidoreductase	Domain
C [auth 3], S [auth D]	IPR036010	2Fe-2S ferredoxin-like superfamily	Homologous Superfamily
C [auth 3], S [auth D]	IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	Domain
C [auth 3], S [auth D]	IPR000283	NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site	Conserved Site
C [auth 3], S [auth D]	IPR054351	NADH-ubiquinone oxidoreductase, ferredoxin-like domain	Domain
C [auth 3], S [auth D]	IPR010228	NADH:ubiquinone oxidoreductase, subunit G	Family
C [auth 3], S [auth D]	IPR009010	Aspartate decarboxylase-like domain superfamily	Homologous Superfamily
C [auth 3], S [auth D]	IPR050123	Prokaryotic molybdopterin-containing oxidoreductase	Family
C [auth 3], S [auth D]	IPR019574	NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding	Domain
D [auth 4], T [auth E]	IPR022885	NAD(P)H-quinone oxidoreductase subunit D/H	Family
D [auth 4], T [auth E]	IPR014029	NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site	Conserved Site
D [auth 4], T [auth E]	IPR029014	[NiFe]-hydrogenase, large subunit	Homologous Superfamily
D [auth 4], T [auth E]	IPR001135	NADH-quinone oxidoreductase, subunit D	Domain
F [auth 6], V [auth G]	IPR006138	NADH-ubiquinone oxidoreductase, 20 Kd subunit	Family
F [auth 6], V [auth G]	IPR006137	NADH:ubiquinone oxidoreductase-like, 20kDa subunit	Domain
G [auth 9], W [auth O]	IPR017900	4Fe-4S ferredoxin, iron-sulphur binding, conserved site	Conserved Site
G [auth 9], W [auth O]	IPR017896	4Fe-4S ferredoxin-type, iron-sulphur binding domain	Domain
G [auth 9], W [auth O]	IPR010226	NADH-quinone oxidoreductase, chain I	Family
H [auth 7], X [auth I]	IPR021093	NADH-quinone oxidoreductase, subunit15	Family
H [auth 7], X [auth I]	IPR038458	NADH-quinone oxidoreductase, subunit 15 superfamily	Homologous Superfamily
H [auth 7], X [auth I]	IPR036524	Frataxin/CyaY superfamily	Homologous Superfamily
I [auth W], Y [auth X]	IPR036828	TTHA1528-like superfamily	Homologous Superfamily
I [auth W], Y [auth X]	IPR024443	Domain of unknown function DUF3197	Family
J [auth A], Z [auth P]	IPR023043	NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastid	Family
J [auth A], Z [auth P]	IPR000440	NADH:ubiquinone/plastoquinone oxidoreductase, chain 3	Family
J [auth A], Z [auth P]	IPR038430	NADH:ubiquinone oxidoreductase, subunit 3 superfamily	Homologous Superfamily
BA [auth S], L [auth K]	IPR001133	NADH-ubiquinone oxidoreductase chain 4L/K	Family
BA [auth S], L [auth K]	IPR039428	NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-like	Family
DA [auth U], N [auth M]	IPR003918	NADH:ubiquinone oxidoreductase	Family
DA [auth U], N [auth M]	IPR010227	NADH-quinone oxidoreductase, chain M/4	Family
DA [auth U], N [auth M]	IPR001750	NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit	Domain
A [auth 1], Q [auth B]	IPR019575	NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain	Domain
A [auth 1], Q [auth B]	IPR019554	Soluble ligand binding domain	Domain
A [auth 1], Q [auth B]	IPR011537	NADH ubiquinone oxidoreductase, F subunit	Family
A [auth 1], Q [auth B]	IPR001949	NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site	Conserved Site
A [auth 1], Q [auth B]	IPR037225	NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily	Homologous Superfamily
A [auth 1], Q [auth B]	IPR037207	NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily	Homologous Superfamily
A [auth 1], Q [auth B]	IPR011538	NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain	Domain
AA [auth R], K [auth J]	IPR042106	NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ	Homologous Superfamily
AA [auth R], K [auth J]	IPR001457	NADH:ubiquinone/plastoquinone oxidoreductase, chain 6	Family
CA [auth T], M [auth L]	IPR003945	NADH-quinone oxidoreductase, chain 5-like	Family
CA [auth T], M [auth L]	IPR001516	NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal	Domain
CA [auth T], M [auth L]	IPR001750	NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit	Domain
CA [auth T], M [auth L]	IPR018393	NADH-plastoquinone oxidoreductase, chain 5 subgroup	Family
EA [auth V], O [auth N]	IPR010096	NAD(P)H-quinone oxidoreductase, subunit N/subunit 2	Family
EA [auth V], O [auth N]	IPR001750	NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit	Domain
FA [auth Q], P [auth H]	IPR001694	NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H	Family
FA [auth Q], P [auth H]	IPR018086	NADH:ubiquinone oxidoreductase, subunit 1, conserved site	Conserved Site
B [auth 2], R [auth C]	IPR042128	NuoE domain	Domain
B [auth 2], R [auth C]	IPR002023	NADH-quinone oxidoreductase subunit E-like	Family
B [auth 2], R [auth C]	IPR041921	NADH-quinone oxidoreductase subunit E, N-terminal	Homologous Superfamily
B [auth 2], R [auth C]	IPR036249	Thioredoxin-like superfamily	Homologous Superfamily
E [auth 5], U [auth F]	IPR037232	NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily	Homologous Superfamily
E [auth 5], U [auth F]	IPR001268	NADH:ubiquinone oxidoreductase, 30kDa subunit	Domain
E [auth 5], U [auth F]	IPR020396	NADH:ubiquinone oxidoreductase, 30kDa subunit, conserved site	Conserved Site
E [auth 5], U [auth F]	IPR010218	NADH dehydrogenase, subunit C	Family

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A [auth 1], AA [auth R], B [auth 2], BA [auth S], C [auth 3] A [auth 1], AA [auth R], B [auth 2], BA [auth S], C [auth 3], CA [auth T], D [auth 4], DA [auth U], E [auth 5], EA [auth V], F [auth 6], FA [auth Q], G [auth 9], H [auth 7], J [auth A], K [auth J], L [auth K], M [auth L], N [auth M], O [auth N], P [auth H], Q [auth B], R [auth C], S [auth D], T [auth E], U [auth F], V [auth G], W [auth O], X [auth I], Z [auth P]	OPM	Transmembrane	Alpha-helical polytopic	Electron transport chain complex I (NADH dehydrogenase) and supercomplexes	H+ or Na+ translocating NADH dehydrogenase

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A [auth 1], AA [auth R], B [auth 2], BA [auth S], C [auth 3] A [auth 1], AA [auth R], B [auth 2], BA [auth S], C [auth 3], CA [auth T], D [auth 4], DA [auth U], E [auth 5], EA [auth V], F [auth 6], FA [auth Q], G [auth 9], H [auth 7], J [auth A], K [auth J], L [auth K], M [auth L], N [auth M], O [auth N], P [auth H], Q [auth B], R [auth C], S [auth D], T [auth E], U [auth F], V [auth G], W [auth O], X [auth I], Z [auth P]	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

Chains	External Link	Comment
A [auth 1], AA [auth R], B [auth 2], BA [auth S], C [auth 3] A [auth 1], AA [auth R], B [auth 2], BA [auth S], C [auth 3], CA [auth T], D [auth 4], DA [auth U], E [auth 5], EA [auth V], F [auth 6], FA [auth Q], G [auth 9], H [auth 7], J [auth A], K [auth J], L [auth K], M [auth L], N [auth M], O [auth N], P [auth H], Q [auth B], R [auth C], S [auth D], T [auth E], U [auth F], V [auth G], W [auth O], X [auth I], Z [auth P]	MemProtMD	Annotated as membrane protein by MemProtMD

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A [auth 1], AA [auth R], B [auth 2], BA [auth S], C [auth 3] A [auth 1], AA [auth R], B [auth 2], BA [auth S], C [auth 3], CA [auth T], D [auth 4], DA [auth U], E [auth 5], EA [auth V], F [auth 6], FA [auth Q], G [auth 9], H [auth 7], J [auth A], K [auth J], L [auth K], M [auth L], N [auth M], O [auth N], P [auth H], Q [auth B], R [auth C], S [auth D], T [auth E], U [auth F], V [auth G], W [auth O], X [auth I], Z [auth P]	mpstruc	TRANSMEMBRANE PROTEINS: ALPHA-HELICAL	Electron Transport Chain Complexes: Complex I	Complex I complete