4K24
Structure of anti-uPAR Fab ATN-658 in complex with uPAR
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | EGF/Laminin-like | 8042597 | 3000412 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Kringle-like | 8042599 | 3000761 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Somatomedin B domain | 8033943 | 3001699 | SCOP2B (2022-06-29) |
E [auth U] | SCOP2B Superfamily | Snake toxin-like | 8032872 | 3000545 | SCOP2B (2022-06-29) |
E [auth U] | SCOP2B Superfamily | Snake toxin-like | 8032873 | 3000545 | SCOP2B (2022-06-29) |
E [auth U] | SCOP2B Superfamily | Snake toxin-like | 8032874 | 3000545 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Kringle | e4k24A1 | A: few secondary structure elements | X: Kringle-like (From Topology) | H: Kringle-like (From Topology) | T: Kringle-like | F: Kringle | ECOD (1.6) |
A | EGF | e4k24A2 | A: few secondary structure elements | X: EGF-like | H: EGF-related | T: EGF/Laminin | F: EGF | ECOD (1.6) |
B | Somatomedin_B | e4k24B1 | A: few secondary structure elements | X: Somatomedin B domain (From Topology) | H: Somatomedin B domain (From Topology) | T: Somatomedin B domain | F: Somatomedin_B | ECOD (1.6) |
C [auth H] | V-set_8 | e4k24H2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
C [auth H] | C1-set_1 | e4k24H1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_1 | ECOD (1.6) |
D [auth L] | C1-set_4 | e4k24L2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_4 | ECOD (1.6) |
D [auth L] | V-set | e4k24L1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
E [auth U] | UPAR_LY6 | e4k24U4 | A: few secondary structure elements | X: Snake toxin-like (From Topology) | H: Snake toxin-like (From Topology) | T: Snake toxin-like | F: UPAR_LY6 | ECOD (1.6) |
E [auth U] | UPAR_LY6_1 | e4k24U5 | A: few secondary structure elements | X: Snake toxin-like (From Topology) | H: Snake toxin-like (From Topology) | T: Snake toxin-like | F: UPAR_LY6_1 | ECOD (1.6) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
C [auth H] | anti-uPAR antibody | VH-CH1 | Mus musculus (house mouse) | IGHV1-43*01, IGHV1-26*01, IGHV1-19*01, IGHJ4*01, IGHG1*02 | V-DOMAIN VH, C-DOMAIN CH1 | IG | FAB-GAMMA-1_KAPPA | IMGT (202444-0) |
D [auth L] | anti-uPAR antibody | L-KAPPA | Mus musculus (house mouse) | IGKV1-135*01, IGKJ5*01, IGKC*01, IGKC*02 | V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA | IG | FAB-GAMMA-1_KAPPA | IMGT (202444-0) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
C [auth H] | Heavy Chain | IGHV1 | - | urokinase plasminogen activator surface receptor | SAbDab (2024-11-08) |
D [auth L] | Light Chain | IGKV1 | Kappa | urokinase plasminogen activator surface receptor | SAbDab (2024-11-08) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00051 | Kringle domain (Kringle) | Kringle domain | Kringle domains have been found in plasminogen, hepatocyte growth factors, prothrombin, and apolipoprotein A. Structure is disulfide-rich, nearly all-beta. | Domain | |
PF01033 | Somatomedin B domain (Somatomedin_B) | Somatomedin B domain | - | Family | |
E [auth U] | PF00021 | u-PAR/Ly-6 domain (UPAR_LY6) | u-PAR/Ly-6 domain | This extracellular disulphide bond rich domain is related to Pfam:PF00087. | Domain |