4KRM

Nanobody/VHH domain 7D12 in complex with domain III of the extracellular region of EGFR, pH 3.5


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad4krma1 Alpha and beta proteins (a/b) Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) L domain-like L domain automated matches human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Ad4krma2 Small proteins Knottins (small inhibitors, toxins, lectins) Growth factor receptor domain automated matches automated matches human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Ad4krma3 Artifacts Tags Tags Tags N-terminal Tags human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Cd4krmc1 Alpha and beta proteins (a/b) Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) L domain-like L domain automated matches human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Cd4krmc2 Small proteins Knottins (small inhibitors, toxins, lectins) Growth factor receptor domain automated matches automated matches human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Cd4krmc3 Artifacts Tags Tags Tags N-terminal Tags human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Ed4krme1 Alpha and beta proteins (a/b) Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) L domain-like L domain automated matches human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Ed4krme2 Small proteins Knottins (small inhibitors, toxins, lectins) Growth factor receptor domain automated matches automated matches human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Ed4krme3 Artifacts Tags Tags Tags N-terminal Tags human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Gd4krmg1 Alpha and beta proteins (a/b) Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) L domain-like L domain automated matches human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Gd4krmg2 Artifacts Tags Tags Tags N-terminal Tags human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Id4krmi1 Alpha and beta proteins (a/b) Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) L domain-like L domain automated matches human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Id4krmi2 Small proteins Knottins (small inhibitors, toxins, lectins) Growth factor receptor domain automated matches automated matches human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Id4krmi3 Artifacts Tags Tags Tags N-terminal Tags human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Kd4krmk1 Alpha and beta proteins (a/b) Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) L domain-like L domain automated matches human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Kd4krmk2 Small proteins Knottins (small inhibitors, toxins, lectins) Growth factor receptor domain automated matches automated matches human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Kd4krmk3 Artifacts Tags Tags Tags N-terminal Tags human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Bd4krmb_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) automated matches llama (Lama glama ) [TaxId: 9844 ], SCOPe (2.08)
Dd4krmd_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) automated matches llama (Lama glama ) [TaxId: 9844 ], SCOPe (2.08)
Fd4krmf_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) automated matches llama (Lama glama ) [TaxId: 9844 ], SCOPe (2.08)
Hd4krmh_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) automated matches llama (Lama glama ) [TaxId: 9844 ], SCOPe (2.08)
Jd4krmj_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) automated matches llama (Lama glama ) [TaxId: 9844 ], SCOPe (2.08)
Ld4krml_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) automated matches llama (Lama glama ) [TaxId: 9844 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyL domain-like 8038760 3001010 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyGrowth factor receptor domain-like 8038763 3000398 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyGrowth factor receptor domain-like 8038763 3000398 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyL domain-like 8038760 3001010 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyGrowth factor receptor domain-like 8038763 3000398 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyL domain-like 8038760 3001010 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyL domain-like 8038760 3001010 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyGrowth factor receptor domain-like 8038763 3000398 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyL domain-like 8038760 3001010 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyGrowth factor receptor domain-like 8038763 3000398 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyGrowth factor receptor domain-like 8038763 3000398 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyL domain-like 8038760 3001010 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ARecep_L_domaine4krmA1 A: beta duplicates or obligate multimersX: Single-stranded right-handed beta-helixH: Leucine-rich repeats (From Topology)T: Leucine-rich repeatsF: Recep_L_domainECOD (1.6)
CRecep_L_domaine4krmC1 A: beta duplicates or obligate multimersX: Single-stranded right-handed beta-helixH: Leucine-rich repeats (From Topology)T: Leucine-rich repeatsF: Recep_L_domainECOD (1.6)
ERecep_L_domaine4krmE1 A: beta duplicates or obligate multimersX: Single-stranded right-handed beta-helixH: Leucine-rich repeats (From Topology)T: Leucine-rich repeatsF: Recep_L_domainECOD (1.6)
GGF_recep_IV,Recep_L_domaine4krmG1 A: beta duplicates or obligate multimersX: Single-stranded right-handed beta-helixH: Leucine-rich repeats (From Topology)T: Leucine-rich repeatsF: GF_recep_IV,Recep_L_domainECOD (1.6)
IRecep_L_domaine4krmI1 A: beta duplicates or obligate multimersX: Single-stranded right-handed beta-helixH: Leucine-rich repeats (From Topology)T: Leucine-rich repeatsF: Recep_L_domainECOD (1.6)
KRecep_L_domaine4krmK1 A: beta duplicates or obligate multimersX: Single-stranded right-handed beta-helixH: Leucine-rich repeats (From Topology)T: Leucine-rich repeatsF: Recep_L_domainECOD (1.6)
BV-set_12e4krmB1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-set_12ECOD (1.6)
DV-set_12e4krmD1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-set_12ECOD (1.6)
FV-set_12e4krmF1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-set_12ECOD (1.6)
HV-set_12e4krmH1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-set_12ECOD (1.6)
JV-set_12e4krmJ1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-set_12ECOD (1.6)
LV-set_12e4krmL1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-set_12ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

IMGT Antibody Annotation IMGT Database Homepage

ChainProtein NameDescriptionOrganism NameGene Allele Name(s)Domain Name(s)Receptor TypeReceptor DescriptionProvenance Source
B, D, F, H, J
Nanobody/VHH domain 7D12 VH Lama glama (llama) IGHV3S1*01, IGHJ4*01 V-DOMAIN VH IG (VH) IMGT (202443-0)

SAbDab Antibody Annotation SAbDab Database Homepage

ChainChain ClassChain SubclassChain TypeAntigen Name(s) Provenance Source
B, D, F, H, J
Heavy ChainIGHV1 -epidermal growth factor receptorSAbDab (2024-11-01)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, C, E, G, I
PF01030Receptor L domain (Recep_L_domain)Receptor L domain- Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, C, E, G, I
Epidermal growth factor receptor
B, D, F, H, J
Nanobody/VHH domain 7D12---

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
A, C, E, G, I
PharosP00533