4KY0 | pdb_00004ky0

Crystal structure of a substrate-free glutamate transporter homologue from Thermococcus kodakarensis

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Cd4ky0c1 Membrane and cell surface proteins and peptides Proton glutamate symport protein Proton glutamate symport protein Proton glutamate symport protein automated matches (Thermococcus kodakarensis KOD1 ) [TaxId: 69014 ], SCOPe (2.08)
Cd4ky0c2 Artifacts Tags Tags Tags C-terminal Tags (Thermococcus kodakarensis KOD1 ) [TaxId: 69014 ], SCOPe (2.08)
Bd4ky0b_ Membrane and cell surface proteins and peptides Proton glutamate symport protein Proton glutamate symport protein Proton glutamate symport protein automated matches (Thermococcus kodakarensis KOD1 ) [TaxId: 69014 ], SCOPe (2.08)
Ad4ky0a_ Membrane and cell surface proteins and peptides Proton glutamate symport protein Proton glutamate symport protein Proton glutamate symport protein automated matches (Thermococcus kodakarensis KOD1 ) [TaxId: 69014 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
CSCOP2 FamilyProton glutamate symport protein 8065924 4003905 SCOP2 (2022-06-29)
CSCOP2 SuperfamilyProton glutamate symport protein 8065925 3001772 SCOP2 (2022-06-29)
BSCOP2B SuperfamilyProton glutamate symport protein 8065925 3001772 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyProton glutamate symport protein 8065925 3001772 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
CInlK_D3e4ky0C1 A: alpha bundlesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: InlK_D3ECOD (develop294)
BInlK_D3e4ky0B1 A: alpha bundlesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: InlK_D3ECOD (develop294)
AInlK_D3e4ky0A1 A: alpha bundlesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: InlK_D3ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
C1.10.3860.10 Mainly Alpha Orthogonal Bundle Proton glutamate symport protein Sodium:dicarboxylate symporterCATH (4.3.0)
B1.10.3860.10 Mainly Alpha Orthogonal Bundle Proton glutamate symport protein Sodium:dicarboxylate symporterCATH (4.3.0)
A1.10.3860.10 Mainly Alpha Orthogonal Bundle Proton glutamate symport protein Sodium:dicarboxylate symporterCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C
PF00375Sodium:dicarboxylate symporter family (SDF)Sodium:dicarboxylate symporter family- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C
Proton/glutamate symporter, SDF family

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C
IPR001991Sodium:dicarboxylate symporterFamily
A, B, C
IPR036458Sodium:dicarboxylate symporter superfamilyHomologous Superfamily
A, B, C
IPR018107Sodium:dicarboxylate symporter, conserved siteConserved Site

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

ChainsExternal LinkComment
A, B, C
PDBTMAnnotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

ChainsExternal LinkComment
A, B, C
MemProtMDAnnotated as membrane protein by MemProtMD

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

ChainsResource LinkGroupSubgroupProtein
A, B, C
mpstrucTRANSMEMBRANE PROTEINS: ALPHA-HELICALAmino Acid Secondary TransportersAspartate Transporter, substrate-free