Crystal structure of a virus like photosystem I from the cyanobacterium Synechocystis PCC 6803
External Resource: Annotation
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Domain Annotation: CATH
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Membrane Protein Annotation: OPM
- Membrane Protein Annotation: PDBTM
- Membrane Protein Annotation: MemProtMD
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| BA [auth I] | SCOP2B Superfamily | Subunit VIII of photosystem I reaction centre, PsaI | 8074504 | 3000819 | SCOP2B (2022-06-29) |
| O [auth i] | SCOP2B Superfamily | Subunit VIII of photosystem I reaction centre, PsaI | 8074504 | 3000819 | SCOP2B (2022-06-29) |
| X [auth 9] | SCOP2B Superfamily | Subunit VIII of photosystem I reaction centre, PsaI | 8074504 | 3000819 | SCOP2B (2022-06-29) |
| Z [auth 7] | SCOP2 Family | Subunit XII of photosystem I reaction centre, PsaM | 8074449 | 4002104 | SCOP2 (2022-06-29) |
| Z [auth 7] | SCOP2 Superfamily | Subunit XII of photosystem I reaction centre, PsaM | 8074450 | 3000829 | SCOP2 (2022-06-29) |
| Q [auth m] | SCOP2B Superfamily | Subunit XII of photosystem I reaction centre, PsaM | 8074450 | 3000829 | SCOP2B (2022-06-29) |
| H [auth M] | SCOP2B Superfamily | Subunit XII of photosystem I reaction centre, PsaM | 8074450 | 3000829 | SCOP2B (2022-06-29) |
| G [auth L] | SCOP2B Superfamily | Photosystem I reaction center subunit XI, PsaL | 8087170 | 3000870 | SCOP2B (2022-06-29) |
| Y [auth 8] | SCOP2B Superfamily | Photosystem I reaction center subunit XI, PsaL | 8087170 | 3000870 | SCOP2B (2022-06-29) |
| P [auth l] | SCOP2B Superfamily | Photosystem I reaction center subunit XI, PsaL | 8087170 | 3000870 | SCOP2B (2022-06-29) |
| N [auth f] | SCOP2B Superfamily | Subunit IX of photosystem I reaction centre, PsaJ | 8074512 | 3000824 | SCOP2B (2022-06-29) |
| W [auth 6] | SCOP2B Superfamily | Subunit IX of photosystem I reaction centre, PsaJ | 8074512 | 3000824 | SCOP2B (2022-06-29) |
| F | SCOP2B Superfamily | Subunit IX of photosystem I reaction centre, PsaJ | 8074512 | 3000824 | SCOP2B (2022-06-29) |
| M [auth e] | SCOP2B Superfamily | Electron transport accessory proteins | 8044474 | 3000325 | SCOP2B (2022-06-29) |
| V [auth 5] | SCOP2B Superfamily | Electron transport accessory proteins | 8044474 | 3000325 | SCOP2B (2022-06-29) |
| E | SCOP2B Superfamily | Electron transport accessory proteins | 8044474 | 3000325 | SCOP2B (2022-06-29) |
| L [auth d] | SCOP2B Superfamily | Photosystem I subunit PsaD | 8074480 | 3000951 | SCOP2B (2022-06-29) |
| U [auth 4] | SCOP2B Superfamily | Photosystem I subunit PsaD | 8074480 | 3000951 | SCOP2B (2022-06-29) |
| D | SCOP2B Superfamily | Photosystem I subunit PsaD | 8074480 | 3000951 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | Photosystem I subunits PsaA/PsaB | 8074462 | 3000850 | SCOP2B (2022-06-29) |
| S [auth 2] | SCOP2B Superfamily | Photosystem I subunits PsaA/PsaB | 8074462 | 3000850 | SCOP2B (2022-06-29) |
| J [auth b] | SCOP2B Superfamily | Photosystem I subunits PsaA/PsaB | 8074462 | 3000850 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | Photosystem I subunits PsaA/PsaB | 8074454 | 3000850 | SCOP2B (2022-06-29) |
| I [auth a] | SCOP2B Superfamily | Photosystem I subunits PsaA/PsaB | 8074454 | 3000850 | SCOP2B (2022-06-29) |
| R [auth 1] | SCOP2B Superfamily | Photosystem I subunits PsaA/PsaB | 8074454 | 3000850 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| BA [auth I] | S-AdoMet_synt_M | e4l6vI1 | A: alpha bundles | X: DEATH domain | H: HTH | T: winged helix domain | F: S-AdoMet_synt_M | ECOD (develop294) |
| O [auth i] | Acylphosphatase | e4l6vi1 | A: alpha bundles | X: Rossmann-like | H: Rossmann-related | T: Nucleotide-binding domain | F: Acylphosphatase | ECOD (develop294) |
| X [auth 9] | S-AdoMet_synt_M | e4l6v91 | A: alpha bundles | X: DEATH domain | H: HTH | T: winged helix domain | F: S-AdoMet_synt_M | ECOD (develop294) |
| Z [auth 7] | S-AdoMet_synt_M | e4l6v71 | A: alpha bundles | X: DEATH domain | H: HTH | T: winged helix domain | F: S-AdoMet_synt_M | ECOD (develop294) |
| Q [auth m] | S-AdoMet_synt_M | e4l6vm1 | A: alpha bundles | X: DEATH domain | H: HTH | T: winged helix domain | F: S-AdoMet_synt_M | ECOD (develop294) |
| H [auth M] | Acylphosphatase | e4l6vM1 | A: alpha bundles | X: Rossmann-like | H: Rossmann-related | T: Nucleotide-binding domain | F: Acylphosphatase | ECOD (develop294) |
| G [auth L] | Acylphosphatase | e4l6vL1 | A: alpha bundles | X: Rossmann-like | H: Rossmann-related | T: Nucleotide-binding domain | F: Acylphosphatase | ECOD (develop294) |
| Y [auth 8] | S-AdoMet_synt_M | e4l6v81 | A: alpha bundles | X: DEATH domain | H: HTH | T: winged helix domain | F: S-AdoMet_synt_M | ECOD (develop294) |
| P [auth l] | S-AdoMet_synt_M | e4l6vl1 | A: alpha bundles | X: DEATH domain | H: HTH | T: winged helix domain | F: S-AdoMet_synt_M | ECOD (develop294) |
| N [auth f] | DUF4170 | e4l6vf1 | A: alpha bundles | X: DEATH domain | H: HTH | T: winged helix domain | F: DUF4170 | ECOD (develop294) |
| W [auth 6] | DUF4170 | e4l6v61 | A: alpha bundles | X: DEATH domain | H: HTH | T: winged helix domain | F: DUF4170 | ECOD (develop294) |
| F | Acylphosphatase | e4l6vF1 | A: alpha bundles | X: Rossmann-like | H: Rossmann-related | T: Nucleotide-binding domain | F: Acylphosphatase | ECOD (develop294) |
| M [auth e] | S-AdoMet_synt_M | e4l6ve1 | A: alpha bundles | X: DEATH domain | H: HTH | T: winged helix domain | F: S-AdoMet_synt_M | ECOD (develop294) |
| V [auth 5] | S-AdoMet_synt_M | e4l6v51 | A: alpha bundles | X: DEATH domain | H: HTH | T: winged helix domain | F: S-AdoMet_synt_M | ECOD (develop294) |
| E | S-AdoMet_synt_M | e4l6vE1 | A: alpha bundles | X: DEATH domain | H: HTH | T: winged helix domain | F: S-AdoMet_synt_M | ECOD (develop294) |
| L [auth d] | S-AdoMet_synt_M | e4l6vd1 | A: alpha bundles | X: DEATH domain | H: HTH | T: winged helix domain | F: S-AdoMet_synt_M | ECOD (develop294) |
| U [auth 4] | S-AdoMet_synt_M | e4l6v41 | A: alpha bundles | X: DEATH domain | H: HTH | T: winged helix domain | F: S-AdoMet_synt_M | ECOD (develop294) |
| D | S-AdoMet_synt_M | e4l6vD1 | A: alpha bundles | X: DEATH domain | H: HTH | T: winged helix domain | F: S-AdoMet_synt_M | ECOD (develop294) |
| K [auth c] | S-AdoMet_synt_M | e4l6vc1 | A: alpha bundles | X: DEATH domain | H: HTH | T: winged helix domain | F: S-AdoMet_synt_M | ECOD (develop294) |
| T [auth 3] | S-AdoMet_synt_M | e4l6v31 | A: alpha bundles | X: DEATH domain | H: HTH | T: winged helix domain | F: S-AdoMet_synt_M | ECOD (develop294) |
| C | S-AdoMet_synt_M | e4l6vC1 | A: alpha bundles | X: DEATH domain | H: HTH | T: winged helix domain | F: S-AdoMet_synt_M | ECOD (develop294) |
| B | S-AdoMet_synt_M | e4l6vB1 | A: alpha bundles | X: DEATH domain | H: HTH | T: winged helix domain | F: S-AdoMet_synt_M | ECOD (develop294) |
| S [auth 2] | S-AdoMet_synt_M | e4l6v21 | A: alpha bundles | X: DEATH domain | H: HTH | T: winged helix domain | F: S-AdoMet_synt_M | ECOD (develop294) |
| J [auth b] | S-AdoMet_synt_M | e4l6vb1 | A: alpha bundles | X: DEATH domain | H: HTH | T: winged helix domain | F: S-AdoMet_synt_M | ECOD (develop294) |
| AA [auth K] | Acylphosphatase | e4l6vK1 | A: alpha bundles | X: Rossmann-like | H: Rossmann-related | T: Nucleotide-binding domain | F: Acylphosphatase | ECOD (develop294) |
| CA [auth k] | S-AdoMet_synt_M | e4l6vk1 | A: alpha bundles | X: DEATH domain | H: HTH | T: winged helix domain | F: S-AdoMet_synt_M | ECOD (develop294) |
| DA [auth 0] | Glu_cyclase_2 | e4l6v01 | A: alpha bundles | X: Outer membrane meander beta-barrels | H: Porins | T: Porin | F: Glu_cyclase_2 | ECOD (develop294) |
| A | S-AdoMet_synt_M | e4l6vA1 | A: alpha bundles | X: DEATH domain | H: HTH | T: winged helix domain | F: S-AdoMet_synt_M | ECOD (develop294) |
| I [auth a] | S-AdoMet_synt_M | e4l6va1 | A: alpha bundles | X: DEATH domain | H: HTH | T: winged helix domain | F: S-AdoMet_synt_M | ECOD (develop294) |
| R [auth 1] | S-AdoMet_synt_M | e4l6v11 | A: alpha bundles | X: DEATH domain | H: HTH | T: winged helix domain | F: S-AdoMet_synt_M | ECOD (develop294) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| BA [auth I], O [auth i], X [auth 9] | PF00796 | Photosystem I reaction centre subunit VIII (PSI_8) | Photosystem I reaction centre subunit VIII | - | Family |
| H [auth M], Q [auth m], Z [auth 7] | PF07465 | Photosystem I protein M (PsaM) (PsaM) | Photosystem I protein M (PsaM) | - | Family |
| G [auth L], P [auth l], Y [auth 8] | PF02605 | Photosystem I reaction centre subunit XI (PsaL) | Photosystem I reaction centre subunit XI | - | Family |
| F, N [auth f], W [auth 6] | PF01701 | Photosystem I reaction centre subunit IX / PsaJ (PSI_PsaJ) | Photosystem I reaction centre subunit IX / PsaJ | - | Family |
| F, N [auth f], W [auth 6] | PF02507 | Photosystem I reaction centre subunit III (PSI_PsaF) | Photosystem I reaction centre subunit III | - | Family |
| E, M [auth e], V [auth 5] | PF02427 | Photosystem I reaction centre subunit IV / PsaE (PSI_PsaE) | Photosystem I reaction centre subunit IV / PsaE | PsaE is a 69 amino acid polypeptide from photosystem I present on the stromal side of the thylakoid membrane [1]. The structure is comprised of a well-defined five-stranded beta-sheet similar to SH3 domains [1]. | Domain |
| D, L [auth d], U [auth 4] | PF02531 | PsaD (PsaD) | PsaD | - | Family |
| C, K [auth c], T [auth 3] | PF12838 | 4Fe-4S dicluster domain (Fer4_7) | 4Fe-4S dicluster domain | Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contai ... | Domain |
| B, J [auth b], S [auth 2] | PF00223 | Photosystem I psaA/psaB protein (PsaA_PsaB) | Photosystem I psaA/psaB protein | - | Family |
| AA [auth K], CA [auth k], DA [auth 0] | PF01241 | Photosystem I psaG / psaK (PSI_PSAK) | Photosystem I psaG / psaK | - | Family |
| A, I [auth a], R [auth 1] | PF00223 | Photosystem I psaA/psaB protein (PsaA_PsaB) | Photosystem I psaA/psaB protein | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Membrane Protein Annotation: OPM OPM Database Homepage
| Chains | External Link | Type | Class | Superfamily | Family |
|---|---|---|---|---|---|
| OPM | Transmembrane | Alpha-helical polytopic | Photosystems | Photosystem I |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
| Chains | External Link | Comment |
|---|---|---|
| PDBTM | Annotated as membrane protein by PDBTM |
Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage
| Chains | External Link | Comment |
|---|---|---|
| MemProtMD | Annotated as membrane protein by MemProtMD |














