Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BA [auth I]SCOP2B SuperfamilySubunit VIII of photosystem I reaction centre, PsaI 8074504 3000819 SCOP2B (2022-06-29)
O [auth i]SCOP2B SuperfamilySubunit VIII of photosystem I reaction centre, PsaI 8074504 3000819 SCOP2B (2022-06-29)
X [auth 9]SCOP2B SuperfamilySubunit VIII of photosystem I reaction centre, PsaI 8074504 3000819 SCOP2B (2022-06-29)
Z [auth 7]SCOP2 FamilySubunit XII of photosystem I reaction centre, PsaM 8074449 4002104 SCOP2 (2022-06-29)
Z [auth 7]SCOP2 SuperfamilySubunit XII of photosystem I reaction centre, PsaM 8074450 3000829 SCOP2 (2022-06-29)
Q [auth m]SCOP2B SuperfamilySubunit XII of photosystem I reaction centre, PsaM 8074450 3000829 SCOP2B (2022-06-29)
H [auth M]SCOP2B SuperfamilySubunit XII of photosystem I reaction centre, PsaM 8074450 3000829 SCOP2B (2022-06-29)
G [auth L]SCOP2B SuperfamilyPhotosystem I reaction center subunit XI, PsaL 8087170 3000870 SCOP2B (2022-06-29)
Y [auth 8]SCOP2B SuperfamilyPhotosystem I reaction center subunit XI, PsaL 8087170 3000870 SCOP2B (2022-06-29)
P [auth l]SCOP2B SuperfamilyPhotosystem I reaction center subunit XI, PsaL 8087170 3000870 SCOP2B (2022-06-29)
N [auth f]SCOP2B SuperfamilySubunit IX of photosystem I reaction centre, PsaJ 8074512 3000824 SCOP2B (2022-06-29)
W [auth 6]SCOP2B SuperfamilySubunit IX of photosystem I reaction centre, PsaJ 8074512 3000824 SCOP2B (2022-06-29)
FSCOP2B SuperfamilySubunit IX of photosystem I reaction centre, PsaJ 8074512 3000824 SCOP2B (2022-06-29)
M [auth e]SCOP2B SuperfamilyElectron transport accessory proteins 8044474 3000325 SCOP2B (2022-06-29)
V [auth 5]SCOP2B SuperfamilyElectron transport accessory proteins 8044474 3000325 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyElectron transport accessory proteins 8044474 3000325 SCOP2B (2022-06-29)
L [auth d]SCOP2B SuperfamilyPhotosystem I subunit PsaD 8074480 3000951 SCOP2B (2022-06-29)
U [auth 4]SCOP2B SuperfamilyPhotosystem I subunit PsaD 8074480 3000951 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyPhotosystem I subunit PsaD 8074480 3000951 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyPhotosystem I subunits PsaA/PsaB 8074462 3000850 SCOP2B (2022-06-29)
S [auth 2]SCOP2B SuperfamilyPhotosystem I subunits PsaA/PsaB 8074462 3000850 SCOP2B (2022-06-29)
J [auth b]SCOP2B SuperfamilyPhotosystem I subunits PsaA/PsaB 8074462 3000850 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyPhotosystem I subunits PsaA/PsaB 8074454 3000850 SCOP2B (2022-06-29)
I [auth a]SCOP2B SuperfamilyPhotosystem I subunits PsaA/PsaB 8074454 3000850 SCOP2B (2022-06-29)
R [auth 1]SCOP2B SuperfamilyPhotosystem I subunits PsaA/PsaB 8074454 3000850 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BA [auth I]S-AdoMet_synt_Me4l6vI1 A: alpha bundlesX: DEATH domainH: HTHT: winged helix domainF: S-AdoMet_synt_MECOD (develop294)
O [auth i]Acylphosphatasee4l6vi1 A: alpha bundlesX: Rossmann-likeH: Rossmann-relatedT: Nucleotide-binding domainF: AcylphosphataseECOD (develop294)
X [auth 9]S-AdoMet_synt_Me4l6v91 A: alpha bundlesX: DEATH domainH: HTHT: winged helix domainF: S-AdoMet_synt_MECOD (develop294)
Z [auth 7]S-AdoMet_synt_Me4l6v71 A: alpha bundlesX: DEATH domainH: HTHT: winged helix domainF: S-AdoMet_synt_MECOD (develop294)
Q [auth m]S-AdoMet_synt_Me4l6vm1 A: alpha bundlesX: DEATH domainH: HTHT: winged helix domainF: S-AdoMet_synt_MECOD (develop294)
H [auth M]Acylphosphatasee4l6vM1 A: alpha bundlesX: Rossmann-likeH: Rossmann-relatedT: Nucleotide-binding domainF: AcylphosphataseECOD (develop294)
G [auth L]Acylphosphatasee4l6vL1 A: alpha bundlesX: Rossmann-likeH: Rossmann-relatedT: Nucleotide-binding domainF: AcylphosphataseECOD (develop294)
Y [auth 8]S-AdoMet_synt_Me4l6v81 A: alpha bundlesX: DEATH domainH: HTHT: winged helix domainF: S-AdoMet_synt_MECOD (develop294)
P [auth l]S-AdoMet_synt_Me4l6vl1 A: alpha bundlesX: DEATH domainH: HTHT: winged helix domainF: S-AdoMet_synt_MECOD (develop294)
N [auth f]DUF4170e4l6vf1 A: alpha bundlesX: DEATH domainH: HTHT: winged helix domainF: DUF4170ECOD (develop294)
W [auth 6]DUF4170e4l6v61 A: alpha bundlesX: DEATH domainH: HTHT: winged helix domainF: DUF4170ECOD (develop294)
FAcylphosphatasee4l6vF1 A: alpha bundlesX: Rossmann-likeH: Rossmann-relatedT: Nucleotide-binding domainF: AcylphosphataseECOD (develop294)
M [auth e]S-AdoMet_synt_Me4l6ve1 A: alpha bundlesX: DEATH domainH: HTHT: winged helix domainF: S-AdoMet_synt_MECOD (develop294)
V [auth 5]S-AdoMet_synt_Me4l6v51 A: alpha bundlesX: DEATH domainH: HTHT: winged helix domainF: S-AdoMet_synt_MECOD (develop294)
ES-AdoMet_synt_Me4l6vE1 A: alpha bundlesX: DEATH domainH: HTHT: winged helix domainF: S-AdoMet_synt_MECOD (develop294)
L [auth d]S-AdoMet_synt_Me4l6vd1 A: alpha bundlesX: DEATH domainH: HTHT: winged helix domainF: S-AdoMet_synt_MECOD (develop294)
U [auth 4]S-AdoMet_synt_Me4l6v41 A: alpha bundlesX: DEATH domainH: HTHT: winged helix domainF: S-AdoMet_synt_MECOD (develop294)
DS-AdoMet_synt_Me4l6vD1 A: alpha bundlesX: DEATH domainH: HTHT: winged helix domainF: S-AdoMet_synt_MECOD (develop294)
K [auth c]S-AdoMet_synt_Me4l6vc1 A: alpha bundlesX: DEATH domainH: HTHT: winged helix domainF: S-AdoMet_synt_MECOD (develop294)
T [auth 3]S-AdoMet_synt_Me4l6v31 A: alpha bundlesX: DEATH domainH: HTHT: winged helix domainF: S-AdoMet_synt_MECOD (develop294)
CS-AdoMet_synt_Me4l6vC1 A: alpha bundlesX: DEATH domainH: HTHT: winged helix domainF: S-AdoMet_synt_MECOD (develop294)
BS-AdoMet_synt_Me4l6vB1 A: alpha bundlesX: DEATH domainH: HTHT: winged helix domainF: S-AdoMet_synt_MECOD (develop294)
S [auth 2]S-AdoMet_synt_Me4l6v21 A: alpha bundlesX: DEATH domainH: HTHT: winged helix domainF: S-AdoMet_synt_MECOD (develop294)
J [auth b]S-AdoMet_synt_Me4l6vb1 A: alpha bundlesX: DEATH domainH: HTHT: winged helix domainF: S-AdoMet_synt_MECOD (develop294)
AA [auth K]Acylphosphatasee4l6vK1 A: alpha bundlesX: Rossmann-likeH: Rossmann-relatedT: Nucleotide-binding domainF: AcylphosphataseECOD (develop294)
CA [auth k]S-AdoMet_synt_Me4l6vk1 A: alpha bundlesX: DEATH domainH: HTHT: winged helix domainF: S-AdoMet_synt_MECOD (develop294)
DA [auth 0]Glu_cyclase_2e4l6v01 A: alpha bundlesX: Outer membrane meander beta-barrelsH: PorinsT: PorinF: Glu_cyclase_2ECOD (develop294)
AS-AdoMet_synt_Me4l6vA1 A: alpha bundlesX: DEATH domainH: HTHT: winged helix domainF: S-AdoMet_synt_MECOD (develop294)
I [auth a]S-AdoMet_synt_Me4l6va1 A: alpha bundlesX: DEATH domainH: HTHT: winged helix domainF: S-AdoMet_synt_MECOD (develop294)
R [auth 1]S-AdoMet_synt_Me4l6v11 A: alpha bundlesX: DEATH domainH: HTHT: winged helix domainF: S-AdoMet_synt_MECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
G [auth L]1.20.1240.10 Mainly Alpha Up-down Bundle Photosystem 1 Reaction Centre Subunit Xi Chain: LCATH (4.3.0)
Y [auth 8]1.20.1240.10 Mainly Alpha Up-down Bundle Photosystem 1 Reaction Centre Subunit Xi Chain: LCATH (4.3.0)
P [auth l]1.20.1240.10 Mainly Alpha Up-down Bundle Photosystem 1 Reaction Centre Subunit Xi Chain: LCATH (4.3.0)
N [auth f]1.10.8.110 Mainly Alpha Orthogonal Bundle Helicase, Ruva Protein domain 3CATH (4.3.0)
W [auth 6]1.10.8.110 Mainly Alpha Orthogonal Bundle Helicase, Ruva Protein domain 3CATH (4.3.0)
F1.10.8.110 Mainly Alpha Orthogonal Bundle Helicase, Ruva Protein domain 3CATH (4.3.0)
M [auth e]2.30.30.50 Mainly Beta Roll SH3 type barrels. CATH (4.3.0)
V [auth 5]2.30.30.50 Mainly Beta Roll SH3 type barrels. CATH (4.3.0)
E2.30.30.50 Mainly Beta Roll SH3 type barrels. CATH (4.3.0)
L [auth d]3.30.1470.10 Alpha Beta 2-Layer Sandwich Photosystem 1 Reaction Centre Subunit Ii Chain: DCATH (4.3.0)
U [auth 4]3.30.1470.10 Alpha Beta 2-Layer Sandwich Photosystem 1 Reaction Centre Subunit Ii Chain: DCATH (4.3.0)
D3.30.1470.10 Alpha Beta 2-Layer Sandwich Photosystem 1 Reaction Centre Subunit Ii Chain: DCATH (4.3.0)
K [auth c]3.30.70.20 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits CATH (4.3.0)
T [auth 3]3.30.70.20 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits CATH (4.3.0)
C3.30.70.20 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits CATH (4.3.0)
B1.20.1130.10 Mainly Alpha Up-down Bundle Photosystem I p700 chlorophyll A apoprotein A1 Photosystem I PsaA/PsaBCATH (4.3.0)
S [auth 2]1.20.1130.10 Mainly Alpha Up-down Bundle Photosystem I p700 chlorophyll A apoprotein A1 Photosystem I PsaA/PsaBCATH (4.3.0)
J [auth b]1.20.1130.10 Mainly Alpha Up-down Bundle Photosystem I p700 chlorophyll A apoprotein A1 Photosystem I PsaA/PsaBCATH (4.3.0)
A1.20.1130.10 Mainly Alpha Up-down Bundle Photosystem I p700 chlorophyll A apoprotein A1 Photosystem I PsaA/PsaBCATH (4.3.0)
I [auth a]1.20.1130.10 Mainly Alpha Up-down Bundle Photosystem I p700 chlorophyll A apoprotein A1 Photosystem I PsaA/PsaBCATH (4.3.0)
R [auth 1]1.20.1130.10 Mainly Alpha Up-down Bundle Photosystem I p700 chlorophyll A apoprotein A1 Photosystem I PsaA/PsaBCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
BA [auth I],
O [auth i],
X [auth 9]
PF00796Photosystem I reaction centre subunit VIII (PSI_8)Photosystem I reaction centre subunit VIII- Family
H [auth M],
Q [auth m],
Z [auth 7]
PF07465Photosystem I protein M (PsaM) (PsaM)Photosystem I protein M (PsaM)- Family
G [auth L],
P [auth l],
Y [auth 8]
PF02605Photosystem I reaction centre subunit XI (PsaL)Photosystem I reaction centre subunit XI- Family
F,
N [auth f],
W [auth 6]
PF01701Photosystem I reaction centre subunit IX / PsaJ (PSI_PsaJ)Photosystem I reaction centre subunit IX / PsaJ- Family
F,
N [auth f],
W [auth 6]
PF02507Photosystem I reaction centre subunit III (PSI_PsaF)Photosystem I reaction centre subunit III- Family
E,
M [auth e],
V [auth 5]
PF02427Photosystem I reaction centre subunit IV / PsaE (PSI_PsaE)Photosystem I reaction centre subunit IV / PsaEPsaE is a 69 amino acid polypeptide from photosystem I present on the stromal side of the thylakoid membrane [1]. The structure is comprised of a well-defined five-stranded beta-sheet similar to SH3 domains [1]. Domain
D,
L [auth d],
U [auth 4]
PF02531PsaD (PsaD)PsaD- Family
C,
K [auth c],
T [auth 3]
PF128384Fe-4S dicluster domain (Fer4_7)4Fe-4S dicluster domainSuperfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contai ...Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contains two 4Fe4S clusters.
Domain
B,
J [auth b],
S [auth 2]
PF00223Photosystem I psaA/psaB protein (PsaA_PsaB)Photosystem I psaA/psaB protein- Family
AA [auth K],
CA [auth k],
DA [auth 0]
PF01241Photosystem I psaG / psaK (PSI_PSAK)Photosystem I psaG / psaK- Family
A,
I [auth a],
R [auth 1]
PF00223Photosystem I psaA/psaB protein (PsaA_PsaB)Photosystem I psaA/psaB protein- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
BA [auth I],
O [auth i],
X [auth 9]
Photosystem I subunit III-
H [auth M],
Q [auth m],
Z [auth 7]
Photosystem I reaction center subunit XII-
G [auth L],
P [auth l],
Y [auth 8]
Photosystem I reaction center subunit XI-
F,
N [auth f],
W [auth 6]
Fusion protein of Photosystem I subunit III and subunit IX-
E,
M [auth e],
V [auth 5]
Photosystem I reaction center subunit IV-
D,
L [auth d],
U [auth 4]
Photosystem I subunit II-
C,
K [auth c],
T [auth 3]
Photosystem I iron-sulfur center
B,
J [auth b],
S [auth 2]
Photosystem I P700 chlorophyll a apoprotein A2
AA [auth K],
CA [auth k],
DA [auth 0]
Photosystem I reaction center subunit VIII-
A,
I [auth a],
R [auth 1]
Photosystem I P700 chlorophyll a apoprotein A1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
BA [auth I],
O [auth i],
X [auth 9]
IPR036357Photosystem I reaction centre subunit VIII superfamilyHomologous Superfamily
BA [auth I],
O [auth i],
X [auth 9]
IPR001302Photosystem I reaction centre subunit VIIIFamily
H [auth M],
Q [auth m],
Z [auth 7]
IPR010010Photosystem I PsaM, reaction centreFamily
H [auth M],
Q [auth m],
Z [auth 7]
IPR037279Photosystem I PsaM, reaction centre superfamilyHomologous Superfamily
G [auth L],
P [auth l],
Y [auth 8]
IPR003757Photosystem I PsaL, reaction centre subunit XIDomain
G [auth L],
P [auth l],
Y [auth 8]
IPR022980Photosystem I, reaction centre subunit XIFamily
G [auth L],
P [auth l],
Y [auth 8]
IPR036592Photosystem I PsaL, reaction centre subunit XI superfamilyHomologous Superfamily
F,
N [auth f],
W [auth 6]
IPR036577Photosystem I PsaF, reaction centre subunit III superfamilyHomologous Superfamily
F,
N [auth f],
W [auth 6]
IPR003666Photosystem I PsaF, reaction centre subunit IIIFamily
F,
N [auth f],
W [auth 6]
IPR002615Photosystem I PsaJ, reaction centre subunit IXFamily
F,
N [auth f],
W [auth 6]
IPR036062Photosystem I PsaJ, reaction centre subunit IX superfamilyHomologous Superfamily
E,
M [auth e],
V [auth 5]
IPR008990Electron transport accessory-like domain superfamilyHomologous Superfamily
E,
M [auth e],
V [auth 5]
IPR003375Photosystem I PsaE, reaction centre subunit IVFamily
D,
L [auth d],
U [auth 4]
IPR003685Photosystem I PsaDFamily
D,
L [auth d],
U [auth 4]
IPR036579Photosystem I, reaction centre subunit PsaD superfamilyHomologous Superfamily
C,
K [auth c],
T [auth 3]
IPR0179004Fe-4S ferredoxin, iron-sulphur binding, conserved siteConserved Site
C,
K [auth c],
T [auth 3]
IPR050157Photosystem I iron-sulfur centerFamily
C,
K [auth c],
T [auth 3]
IPR0178964Fe-4S ferredoxin-type, iron-sulphur binding domainDomain
C,
K [auth c],
T [auth 3]
IPR017491Photosystem I protein PsaCFamily
B,
J [auth b],
S [auth 2]
IPR036408Photosystem I PsaA/PsaB superfamilyHomologous Superfamily
B,
J [auth b],
S [auth 2]
IPR001280Photosystem I PsaA/PsaBFamily
B,
J [auth b],
S [auth 2]
IPR006244Photosystem I PsaBFamily
B,
J [auth b],
S [auth 2]
IPR020586Photosystem I PsaA/PsaB, conserved siteConserved Site
AA [auth K],
CA [auth k],
DA [auth 0]
IPR037101Photosystem I reaction centre subunit PsaKHomologous Superfamily
AA [auth K],
CA [auth k],
DA [auth 0]
IPR000549Photosystem I reaction center subunit V/PsaKFamily
AA [auth K],
CA [auth k],
DA [auth 0]
IPR035982Photosystem I reaction centre subunit PsaK superfamilyHomologous Superfamily
AA [auth K],
CA [auth k],
DA [auth 0]
IPR017492Photosystem I reaction center subunit PsaKFamily
A,
I [auth a],
R [auth 1]
IPR036408Photosystem I PsaA/PsaB superfamilyHomologous Superfamily
A,
I [auth a],
R [auth 1]
IPR001280Photosystem I PsaA/PsaBFamily
A,
I [auth a],
R [auth 1]
IPR006243Photosystem I PsaAFamily
A,
I [auth a],
R [auth 1]
IPR020586Photosystem I PsaA/PsaB, conserved siteConserved Site