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 4N75 | pdb_00004n75

Structural Basis of BamA-mediate Outer Membrane Protein Biogenesis

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B SuperfamilyPorins 8052233 3000224 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyPorins 8052233 3000224 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BCBM_4_9e4n75B1 A: alpha arraysX: Glycosyl hydrolase domain-likeH: alpha/alpha toroidT: alpha/alpha toroidF: CBM_4_9ECOD (v295.2)
AAAA_23e4n75A1 A: alpha arraysX: DEATH domainH: 6-phosphogluconate dehydrogenase C-terminal domain-likeT: 6-phosphogluconate dehydrogenase C-terminal domain-likeF: AAA_23ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B2.40.160.50 Mainly Beta Beta Barrel Porin membrane protein fhac: a member of the omp85/tpsb transporter familyCATH (4.3.0)
A2.40.160.50 Mainly Beta Beta Barrel Porin membrane protein fhac: a member of the omp85/tpsb transporter familyCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF01103Omp85 superfamily domain (Omp85)Omp85 superfamily domainThe Omp85 protein superfamily contains bacterial outer membrane proteins, which can function as protein translocases or as membrane protein assembly factors [1]. The family includes the membrane bound beta barrel of proteins such as BamA and TamA fro ...The Omp85 protein superfamily contains bacterial outer membrane proteins, which can function as protein translocases or as membrane protein assembly factors [1]. The family includes the membrane bound beta barrel of proteins such as BamA and TamA from E. coli.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B
Outer membrane protein assembly factor BamA

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR039910Surface antigen D15-likeFamily
A, B
IPR000184Outer membrane protein assembly factor BamA-likeDomain
A, B
IPR034746POTRA domainDomain
A, B
IPR010827POTRA domain, BamA/TamA-likeDomain
A, B
IPR023707Outer membrane protein assembly factor BamAFamily

Membrane Protein Annotation: OPM OPM Database Homepage

ChainsExternal LinkTypeClassSuperfamilyFamily
A, B
OPMTransmembraneBeta-barrel transmembraneOmp85-TpsB transporters (n=16,S=20,22)OMP insertion (Bam complex) porin (n=16,S=22)

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

ChainsExternal LinkComment
A, B
PDBTMAnnotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

ChainsExternal LinkComment
A, B
MemProtMDAnnotated as membrane protein by MemProtMD

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

ChainsResource LinkGroupSubgroupProtein
A, B
mpstrucTRANSMEMBRANE PROTEINS: BETA-BARRELOmp85-TpsB Outer Membrane Transporter SuperfamilyBamA without POTRA domains.