Annotations: 4ONW

Crystal structure of the catalytic domain of DapE protein from V.cholerea

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Ribonuc_red_lgN	e4onwB1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: Ribonuc_red_lgN	ECOD (v295.2)
A	Ribonuc_red_lgN	e4onwA1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: Ribonuc_red_lgN	ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.40.630.10	Alpha Beta	3-Layer(aba) Sandwich	Aminopeptidase	Zn peptidases	CATH (4.3.0)
A	3.40.630.10	Alpha Beta	3-Layer(aba) Sandwich	Aminopeptidase	Zn peptidases	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF01546	Peptidase family M20/M25/M40 (Peptidase_M20)	Peptidase family M20/M25/M40	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Succinyl-diaminopimelate desuccinylase	cation binding transition metal ion binding ion binding binding metal ion binding cobalt ion binding small molecule binding zinc ion binding succinyl-diaminopimelate desuccinylase activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides hydrolase activity catalytic activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	-	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR005941	Succinyl-diaminopimelate desuccinylase, proteobacteria	Family
A, B	IPR002933	Peptidase M20	Family
A, B	IPR001261	ArgE/DapE/ACY1/CPG2/YscS, conserved site	Conserved Site
A, B	IPR036264	Bacterial exopeptidase dimerisation domain	Homologous Superfamily
A, B	IPR050072	Peptidase M20A, bacterial cell wall biosynthesis	Family
A, B	IPR011650	Peptidase M20, dimerisation domain	Domain

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.